miRNA display CGI


Results 161 - 180 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 5' -59.5 NC_002512.2 + 228064 0.69 0.666918
Target:  5'- cGGCUGC-GGcGCGGGAGaCGAcgggcugcACACGGu -3'
miRNA:   3'- aCCGGCGaCC-CGCUCUC-GCU--------UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 134084 0.69 0.666918
Target:  5'- cGGCugCGCUGGGCGAGcuacgaGGCGAcgauaagccugACGcCGAg -3'
miRNA:   3'- aCCG--GCGACCCGCUC------UCGCU-----------UGU-GCU- -5'
9212 5' -59.5 NC_002512.2 + 120782 0.7 0.657201
Target:  5'- cGGCCGUc-GGCGGGGGCGGcgGgACGGc -3'
miRNA:   3'- aCCGGCGacCCGCUCUCGCU--UgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 14485 0.7 0.657201
Target:  5'- gGGCCa--GGGC-AGGGCGAACAUGGu -3'
miRNA:   3'- aCCGGcgaCCCGcUCUCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 9400 0.7 0.657201
Target:  5'- cGGCCucGCUgcGGGUGAG-GCGGACguagGCGAa -3'
miRNA:   3'- aCCGG--CGA--CCCGCUCuCGCUUG----UGCU- -5'
9212 5' -59.5 NC_002512.2 + 225802 0.7 0.647465
Target:  5'- gGGCCGC-GGGCGGccGGGUGGcCugGGa -3'
miRNA:   3'- aCCGGCGaCCCGCU--CUCGCUuGugCU- -5'
9212 5' -59.5 NC_002512.2 + 130852 0.7 0.647465
Target:  5'- cGGCgGUcGGGCGAGGcccccacCGGGCGCGAg -3'
miRNA:   3'- aCCGgCGaCCCGCUCUc------GCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 38434 0.7 0.637719
Target:  5'- cGGCCcaccucaacGCcccGGGCG-GAGUGAACAUGAc -3'
miRNA:   3'- aCCGG---------CGa--CCCGCuCUCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 15646 0.7 0.637719
Target:  5'- cGGCCGC-GGGCG---GCGAGCcgACGAg -3'
miRNA:   3'- aCCGGCGaCCCGCucuCGCUUG--UGCU- -5'
9212 5' -59.5 NC_002512.2 + 123531 0.7 0.637719
Target:  5'- gGGCCGCgagGuGGCGAGcucGCGGGacgaGCGAc -3'
miRNA:   3'- aCCGGCGa--C-CCGCUCu--CGCUUg---UGCU- -5'
9212 5' -59.5 NC_002512.2 + 47025 0.7 0.627968
Target:  5'- gGaGCUGCUGGGCGAgcuGAG-GAaGCACGGg -3'
miRNA:   3'- aC-CGGCGACCCGCU---CUCgCU-UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 90935 0.7 0.61822
Target:  5'- cGGgCGCgaccgGGGCGuGcGUGGGCGCGAc -3'
miRNA:   3'- aCCgGCGa----CCCGCuCuCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 171854 0.7 0.61822
Target:  5'- cGGCCGCggccGGGaGGGGGCgGAACGCc- -3'
miRNA:   3'- aCCGGCGa---CCCgCUCUCG-CUUGUGcu -5'
9212 5' -59.5 NC_002512.2 + 25415 0.7 0.61822
Target:  5'- aGGgCGUUacGGGCGuagacccGGGCGAACGCGGg -3'
miRNA:   3'- aCCgGCGA--CCCGCu------CUCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 2801 0.7 0.61822
Target:  5'- cGGCCgGCggccGGCGGGAcccggcGCGGGCGCGGg -3'
miRNA:   3'- aCCGG-CGac--CCGCUCU------CGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 93386 0.7 0.61822
Target:  5'- gGGCCGCaGGGCGcGc-CGAACGCGu -3'
miRNA:   3'- aCCGGCGaCCCGCuCucGCUUGUGCu -5'
9212 5' -59.5 NC_002512.2 + 74552 0.7 0.61822
Target:  5'- cGGCCGC-GGcGaCGGGAGCGAGguugGCGAg -3'
miRNA:   3'- aCCGGCGaCC-C-GCUCUCGCUUg---UGCU- -5'
9212 5' -59.5 NC_002512.2 + 215168 0.7 0.608482
Target:  5'- cUGGCCGUccUGcuGCucgGGGAGCGGACGCGGg -3'
miRNA:   3'- -ACCGGCG--ACc-CG---CUCUCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 156478 0.7 0.608482
Target:  5'- gGGCgGCgggcucGGCGGGcugGGCGGACACGGc -3'
miRNA:   3'- aCCGgCGac----CCGCUC---UCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 91872 0.7 0.608482
Target:  5'- aGGCCGCcguccGGCGcGGGCGGcgGCGCGGc -3'
miRNA:   3'- aCCGGCGac---CCGCuCUCGCU--UGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.