Results 101 - 120 of 233 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9212 | 5' | -59.5 | NC_002512.2 | + | 111234 | 0.68 | 0.752303 |
Target: 5'- gGGCgGCcGGGCGcccGGAGCGucgggcggcACGCGGa -3' miRNA: 3'- aCCGgCGaCCCGC---UCUCGCu--------UGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 111289 | 0.67 | 0.82186 |
Target: 5'- cGGCCGCcgcgGGGaGAGGGCcgccGAuCGCGGc -3' miRNA: 3'- aCCGGCGa---CCCgCUCUCG----CUuGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 111335 | 0.67 | 0.805264 |
Target: 5'- -uGCCGUUGuuGGCGucccGGGCGcGCACGAg -3' miRNA: 3'- acCGGCGAC--CCGCu---CUCGCuUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 112901 | 0.66 | 0.838611 |
Target: 5'- cGGCCGUcggcccgcccggacgGGGCGucGGCGGcccgguggcGCGCGAg -3' miRNA: 3'- aCCGGCGa--------------CCCGCucUCGCU---------UGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 113660 | 0.66 | 0.83783 |
Target: 5'- cGGCCGgcc-GCGAGGGUGcGCGCGGg -3' miRNA: 3'- aCCGGCgaccCGCUCUCGCuUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 114258 | 0.66 | 0.845563 |
Target: 5'- cGGCUGCgcgaGGCGAGAauccuCGAacgGCGCGAu -3' miRNA: 3'- aCCGGCGac--CCGCUCUc----GCU---UGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 115283 | 0.68 | 0.770425 |
Target: 5'- cUGGCCG--GGGUGAucGUGAGCACGc -3' miRNA: 3'- -ACCGGCgaCCCGCUcuCGCUUGUGCu -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 115467 | 0.66 | 0.837047 |
Target: 5'- cGGaCCGCgUGGGagccgguCGAGA-UGAGCGCGAg -3' miRNA: 3'- aCC-GGCG-ACCC-------GCUCUcGCUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 116891 | 0.71 | 0.58906 |
Target: 5'- cUGGCgGCgGGGCcGGGGCGGGCuccuCGGa -3' miRNA: 3'- -ACCGgCGaCCCGcUCUCGCUUGu---GCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 117003 | 0.66 | 0.860496 |
Target: 5'- cGGCCGCacgcaGGGCGGGcgcaagaucaucGGCGGcCGgGAg -3' miRNA: 3'- aCCGGCGa----CCCGCUC------------UCGCUuGUgCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 118116 | 0.72 | 0.522269 |
Target: 5'- cGGCCguaucGCUgacgggggaggGGGCGGGGGCGGAacCGCGAc -3' miRNA: 3'- aCCGG-----CGA-----------CCCGCUCUCGCUU--GUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 118789 | 0.68 | 0.721592 |
Target: 5'- -cGCCGCcGGGCGGGAGCuguGGGCccccgucguggucgGCGAc -3' miRNA: 3'- acCGGCGaCCCGCUCUCG---CUUG--------------UGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 119198 | 0.66 | 0.853121 |
Target: 5'- cUGGCC-CUGcGGCGGcuGcGCGAGCACc- -3' miRNA: 3'- -ACCGGcGAC-CCGCU--CuCGCUUGUGcu -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 119410 | 0.66 | 0.853121 |
Target: 5'- cGuGCCGCUGcuCGGGAGCGuggacCGCGGg -3' miRNA: 3'- aC-CGGCGACccGCUCUCGCuu---GUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 120782 | 0.7 | 0.657201 |
Target: 5'- cGGCCGUc-GGCGGGGGCGGcgGgACGGc -3' miRNA: 3'- aCCGGCGacCCGCUCUCGCU--UgUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 121005 | 0.71 | 0.58906 |
Target: 5'- cGGCagaGCgaagcgGGGCGugcugaccucGGGCGAGCGCGAc -3' miRNA: 3'- aCCGg--CGa-----CCCGCu---------CUCGCUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 121160 | 0.71 | 0.58906 |
Target: 5'- cGGCCGCggcccaGGGCGAGGcguucuCGGACgACGAc -3' miRNA: 3'- aCCGGCGa-----CCCGCUCUc-----GCUUG-UGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 121242 | 0.66 | 0.848607 |
Target: 5'- gUGGaCCGCcccgUGGGUcccguugcaggucagGAGgaAGCGGACGCGGu -3' miRNA: 3'- -ACC-GGCG----ACCCG---------------CUC--UCGCUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 121885 | 0.69 | 0.718758 |
Target: 5'- aGGUCGCggGGGaCGcucggcgacgcgcggGGAGCGAGCGgGAc -3' miRNA: 3'- aCCGGCGa-CCC-GC---------------UCUCGCUUGUgCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 122325 | 0.71 | 0.58906 |
Target: 5'- gUGGCC-CUGaGGCGGGGGaCGGACaACGu -3' miRNA: 3'- -ACCGGcGAC-CCGCUCUC-GCUUG-UGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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