Results 121 - 140 of 233 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9212 | 5' | -59.5 | NC_002512.2 | + | 122765 | 0.68 | 0.761416 |
Target: 5'- gGGCCGgaGGaCGAGGaCGAGgACGAg -3' miRNA: 3'- aCCGGCgaCCcGCUCUcGCUUgUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 122889 | 0.67 | 0.794168 |
Target: 5'- cGGCCGaccccggcccGGGCGucccggccuucuacGGGGaCGAGCGCGAg -3' miRNA: 3'- aCCGGCga--------CCCGC--------------UCUC-GCUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 123123 | 0.76 | 0.330701 |
Target: 5'- -cGCCGC-GGGcCGAGAGCcGGACGCGGa -3' miRNA: 3'- acCGGCGaCCC-GCUCUCG-CUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 123149 | 0.71 | 0.550602 |
Target: 5'- aGcGCCGCcgGGGcCGAGgaGGCGGACAgGAg -3' miRNA: 3'- aC-CGGCGa-CCC-GCUC--UCGCUUGUgCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 123531 | 0.7 | 0.637719 |
Target: 5'- gGGCCGCgagGuGGCGAGcucGCGGGacgaGCGAc -3' miRNA: 3'- aCCGGCGa--C-CCGCUCu--CGCUUg---UGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 123552 | 0.69 | 0.67661 |
Target: 5'- cGGgCGCggacgucgaGGGgGAGAGCGAcggGCugGAc -3' miRNA: 3'- aCCgGCGa--------CCCgCUCUCGCU---UGugCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 125391 | 0.67 | 0.776665 |
Target: 5'- cGGaCGCUuccugaaccuccccGGGCccGAGGGCGAACgACGAc -3' miRNA: 3'- aCCgGCGA--------------CCCG--CUCUCGCUUG-UGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 126334 | 0.66 | 0.845563 |
Target: 5'- aGGCCGCcgcguccGGGac-GGGCGcGCACGAc -3' miRNA: 3'- aCCGGCGa------CCCgcuCUCGCuUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 126657 | 0.67 | 0.805264 |
Target: 5'- cGGCCGUcgacGGGCGGcGAcGCGAGC-CGc -3' miRNA: 3'- aCCGGCGa---CCCGCU-CU-CGCUUGuGCu -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 127102 | 0.68 | 0.761416 |
Target: 5'- cGGCgGCgGcGGCGGGAGaUGGGCGgGAu -3' miRNA: 3'- aCCGgCGaC-CCGCUCUC-GCUUGUgCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 127487 | 0.67 | 0.82186 |
Target: 5'- gUGGCCGCcgcccucGGGCGGGAGCa------- -3' miRNA: 3'- -ACCGGCGa------CCCGCUCUCGcuugugcu -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 127903 | 0.69 | 0.666918 |
Target: 5'- aGGUCGCgaccguggGaGGCGAGGGCGGAU-CGGu -3' miRNA: 3'- aCCGGCGa-------C-CCGCUCUCGCUUGuGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 128197 | 0.68 | 0.724419 |
Target: 5'- gGGCCGCc-GGCGGGAcCGGGgACGGg -3' miRNA: 3'- aCCGGCGacCCGCUCUcGCUUgUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 129211 | 0.68 | 0.743094 |
Target: 5'- -cGCCGCUGGccGCgGAGAaCGAACGCGc -3' miRNA: 3'- acCGGCGACC--CG-CUCUcGCUUGUGCu -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 129282 | 0.66 | 0.83783 |
Target: 5'- gGGaCUGggggGGGgGGGAGgGAGCACGGc -3' miRNA: 3'- aCC-GGCga--CCCgCUCUCgCUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 130149 | 0.69 | 0.705457 |
Target: 5'- cGGCCGCgGGGCccGGcGGCGGGC-CGGc -3' miRNA: 3'- aCCGGCGaCCCG--CUcUCGCUUGuGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 130251 | 0.68 | 0.743094 |
Target: 5'- cGGgCGCcGGGCccuccGAGGGCGAcgaccgcgacgaGCGCGGg -3' miRNA: 3'- aCCgGCGaCCCG-----CUCUCGCU------------UGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 130454 | 0.69 | 0.686269 |
Target: 5'- aGGUCGUgucguccgacaGGaGCGGGGGCGGAgACGAa -3' miRNA: 3'- aCCGGCGa----------CC-CGCUCUCGCUUgUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 130589 | 0.66 | 0.845563 |
Target: 5'- aGGCCGCggccucgGaGGCGgaGGAGaCGAagagcccgGCGCGAc -3' miRNA: 3'- aCCGGCGa------C-CCGC--UCUC-GCU--------UGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 130852 | 0.7 | 0.647465 |
Target: 5'- cGGCgGUcGGGCGAGGcccccacCGGGCGCGAg -3' miRNA: 3'- aCCGgCGaCCCGCUCUc------GCUUGUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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