miRNA display CGI


Results 141 - 160 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 5' -59.5 NC_002512.2 + 131676 0.75 0.383307
Target:  5'- gGGCCGCgaGGGCGGuGAGCccgGAGCGCa- -3'
miRNA:   3'- aCCGGCGa-CCCGCU-CUCG---CUUGUGcu -5'
9212 5' -59.5 NC_002512.2 + 131999 0.66 0.860496
Target:  5'- gGGCCGCcccGGGCGccGGGgGGACcucgGCGGc -3'
miRNA:   3'- aCCGGCGa--CCCGCu-CUCgCUUG----UGCU- -5'
9212 5' -59.5 NC_002512.2 + 133008 0.66 0.860496
Target:  5'- aUGGCCGCcgacggagaacUGGGagaagaCGAcGAGCGAGuCGCGc -3'
miRNA:   3'- -ACCGGCG-----------ACCC------GCU-CUCGCUU-GUGCu -5'
9212 5' -59.5 NC_002512.2 + 134084 0.69 0.666918
Target:  5'- cGGCugCGCUGGGCGAGcuacgaGGCGAcgauaagccugACGcCGAg -3'
miRNA:   3'- aCCG--GCGACCCGCUC------UCGCU-----------UGU-GCU- -5'
9212 5' -59.5 NC_002512.2 + 134530 0.78 0.247601
Target:  5'- cGGCguccCGCUGuGGCGAcaGAGCGAGCugGAg -3'
miRNA:   3'- aCCG----GCGAC-CCGCU--CUCGCUUGugCU- -5'
9212 5' -59.5 NC_002512.2 + 135357 0.68 0.721592
Target:  5'- cUGGCCGUcgaccgcuucguccUGGGCGGGuuCGAAgACGc -3'
miRNA:   3'- -ACCGGCG--------------ACCCGCUCucGCUUgUGCu -5'
9212 5' -59.5 NC_002512.2 + 136080 0.67 0.779322
Target:  5'- cGGCCGggGGGCcGGcuGCGGACGCc- -3'
miRNA:   3'- aCCGGCgaCCCGcUCu-CGCUUGUGcu -5'
9212 5' -59.5 NC_002512.2 + 137889 0.66 0.860496
Target:  5'- -cGCCGCcGGcgacGCGGGAGaccCGGACGCGGc -3'
miRNA:   3'- acCGGCGaCC----CGCUCUC---GCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 139277 0.67 0.779322
Target:  5'- cGGCgCGCggGGGCGAaGGgGGGCGCc- -3'
miRNA:   3'- aCCG-GCGa-CCCGCUcUCgCUUGUGcu -5'
9212 5' -59.5 NC_002512.2 + 140988 0.66 0.860496
Target:  5'- cGGaUCGggGGGCacGGGGGgGAGCGCGGg -3'
miRNA:   3'- aCC-GGCgaCCCG--CUCUCgCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 143555 0.68 0.750469
Target:  5'- cGGCCGCgcgucuccccgcGGGCGGGccGGCGGAgAgGGa -3'
miRNA:   3'- aCCGGCGa-----------CCCGCUC--UCGCUUgUgCU- -5'
9212 5' -59.5 NC_002512.2 + 149414 0.81 0.165806
Target:  5'- gGGCCGCgaggggaccGcGGCGGGGGCGGGCGCGGg -3'
miRNA:   3'- aCCGGCGa--------C-CCGCUCUCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 149514 0.69 0.695887
Target:  5'- aGGCCGC--GGCcGGAGCGGGC-CGGc -3'
miRNA:   3'- aCCGGCGacCCGcUCUCGCUUGuGCU- -5'
9212 5' -59.5 NC_002512.2 + 149813 0.66 0.860496
Target:  5'- aUGGUCGaggacagcGaGGCgGAGAGCGAcccGCGCGAc -3'
miRNA:   3'- -ACCGGCga------C-CCG-CUCUCGCU---UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 150219 0.66 0.83783
Target:  5'- aGGCCGCcGGG-GAG-GCGAu--CGAg -3'
miRNA:   3'- aCCGGCGaCCCgCUCuCGCUuguGCU- -5'
9212 5' -59.5 NC_002512.2 + 152805 0.69 0.686269
Target:  5'- aGGuCCGCggcgacGGCGGGcGGCGAGCAgGAu -3'
miRNA:   3'- aCC-GGCGac----CCGCUC-UCGCUUGUgCU- -5'
9212 5' -59.5 NC_002512.2 + 153123 0.66 0.860496
Target:  5'- cGGUgGCgacGGGCGGGAcggGCGAuccggguCGCGGu -3'
miRNA:   3'- aCCGgCGa--CCCGCUCU---CGCUu------GUGCU- -5'
9212 5' -59.5 NC_002512.2 + 153377 0.68 0.733797
Target:  5'- cGGCgGCU-GGCGguccGGAGCGAcguggaGCGCGGc -3'
miRNA:   3'- aCCGgCGAcCCGC----UCUCGCU------UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 154561 0.68 0.724419
Target:  5'- cGGUCGCcaUGGGgGGGcaggauaacGGCGAGgGCGAc -3'
miRNA:   3'- aCCGGCG--ACCCgCUC---------UCGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 154699 0.71 0.569752
Target:  5'- cGGCCGUccGGCGucGAGCG-GCGCGAc -3'
miRNA:   3'- aCCGGCGacCCGCu-CUCGCuUGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.