miRNA display CGI


Results 161 - 180 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 5' -59.5 NC_002512.2 + 154791 0.71 0.58906
Target:  5'- cUGGCuCGgaGGgaGCGGGAGUGAGCgACGGa -3'
miRNA:   3'- -ACCG-GCgaCC--CGCUCUCGCUUG-UGCU- -5'
9212 5' -59.5 NC_002512.2 + 155871 0.67 0.813637
Target:  5'- cGGCCacGCUGuucguccccgacGGCGGGcGCGGGgACGAg -3'
miRNA:   3'- aCCGG--CGAC------------CCGCUCuCGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 156438 0.66 0.867685
Target:  5'- cGGCCggGCUGGGgggcucCGGGGGCG-GCGgGGg -3'
miRNA:   3'- aCCGG--CGACCC------GCUCUCGCuUGUgCU- -5'
9212 5' -59.5 NC_002512.2 + 156478 0.7 0.608482
Target:  5'- gGGCgGCgggcucGGCGGGcugGGCGGACACGGc -3'
miRNA:   3'- aCCGgCGac----CCGCUC---UCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 157165 0.71 0.58906
Target:  5'- gGGCCGg-GcGGCGuGGGCGGcgGCGCGAc -3'
miRNA:   3'- aCCGGCgaC-CCGCuCUCGCU--UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 157373 0.69 0.686269
Target:  5'- gGGCCGCcGGGCaGGGAcCGGACGaGAu -3'
miRNA:   3'- aCCGGCGaCCCG-CUCUcGCUUGUgCU- -5'
9212 5' -59.5 NC_002512.2 + 158564 0.66 0.829926
Target:  5'- gGGCCGCuccUGGcGCGAcAGCGu-CACGu -3'
miRNA:   3'- aCCGGCG---ACC-CGCUcUCGCuuGUGCu -5'
9212 5' -59.5 NC_002512.2 + 158981 0.66 0.829926
Target:  5'- cGGCgGCcacGGCG-GGGCGGAgGCGGc -3'
miRNA:   3'- aCCGgCGac-CCGCuCUCGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 160847 0.79 0.215461
Target:  5'- cGGCggCGCUGGGCGcagucgcagaGGGGCGGACACGu -3'
miRNA:   3'- aCCG--GCGACCCGC----------UCUCGCUUGUGCu -5'
9212 5' -59.5 NC_002512.2 + 160932 0.66 0.83783
Target:  5'- -aGUCGCUGcGGCGGuGGGgGGGuCACGAg -3'
miRNA:   3'- acCGGCGAC-CCGCU-CUCgCUU-GUGCU- -5'
9212 5' -59.5 NC_002512.2 + 166459 0.68 0.770425
Target:  5'- cGG-CGCcGGGCucGAGGGCGGGgACGGc -3'
miRNA:   3'- aCCgGCGaCCCG--CUCUCGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 168134 0.76 0.33356
Target:  5'- cGGCCGCggcgagGGGCuggggguggggggcgGAGAGgGGACGCGGc -3'
miRNA:   3'- aCCGGCGa-----CCCG---------------CUCUCgCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 170406 0.69 0.695887
Target:  5'- aGGCCGCUcgagacccgcuGGCGAGGGCcucGGAUACGu -3'
miRNA:   3'- aCCGGCGAc----------CCGCUCUCG---CUUGUGCu -5'
9212 5' -59.5 NC_002512.2 + 171854 0.7 0.61822
Target:  5'- cGGCCGCggccGGGaGGGGGCgGAACGCc- -3'
miRNA:   3'- aCCGGCGa---CCCgCUCUCG-CUUGUGcu -5'
9212 5' -59.5 NC_002512.2 + 175260 0.67 0.813637
Target:  5'- gGGCCGCgcucGGCGGGuagcuGGCGGcCGCGu -3'
miRNA:   3'- aCCGGCGac--CCGCUC-----UCGCUuGUGCu -5'
9212 5' -59.5 NC_002512.2 + 178502 0.67 0.796749
Target:  5'- uUGGCCGCcuccaGGGCucuGAGGGCGucCGCc- -3'
miRNA:   3'- -ACCGGCGa----CCCG---CUCUCGCuuGUGcu -5'
9212 5' -59.5 NC_002512.2 + 182079 0.67 0.805264
Target:  5'- -aGCCGCggcuccgGGGUcuGGGCGAACAgGAu -3'
miRNA:   3'- acCGGCGa------CCCGcuCUCGCUUGUgCU- -5'
9212 5' -59.5 NC_002512.2 + 184640 0.68 0.752303
Target:  5'- cGGCCGac-GGCGAGuccGCGGGCGCc- -3'
miRNA:   3'- aCCGGCgacCCGCUCu--CGCUUGUGcu -5'
9212 5' -59.5 NC_002512.2 + 185221 0.71 0.578423
Target:  5'- gUGGcCCGCgucguggaacgcgUGGGCGAGAGCcucGAcCGCGGu -3'
miRNA:   3'- -ACC-GGCG-------------ACCCGCUCUCG---CUuGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 186229 0.66 0.853121
Target:  5'- cGGCCGCcaccgaGGGCGAGGuccCGGuccucgguCACGAg -3'
miRNA:   3'- aCCGGCGa-----CCCGCUCUc--GCUu-------GUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.