miRNA display CGI


Results 61 - 80 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 5' -59.5 NC_002512.2 + 170406 0.69 0.695887
Target:  5'- aGGCCGCUcgagacccgcuGGCGAGGGCcucGGAUACGu -3'
miRNA:   3'- aCCGGCGAc----------CCGCUCUCG---CUUGUGCu -5'
9212 5' -59.5 NC_002512.2 + 168134 0.76 0.33356
Target:  5'- cGGCCGCggcgagGGGCuggggguggggggcgGAGAGgGGACGCGGc -3'
miRNA:   3'- aCCGGCGa-----CCCG---------------CUCUCgCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 166459 0.68 0.770425
Target:  5'- cGG-CGCcGGGCucGAGGGCGGGgACGGc -3'
miRNA:   3'- aCCgGCGaCCCG--CUCUCGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 160932 0.66 0.83783
Target:  5'- -aGUCGCUGcGGCGGuGGGgGGGuCACGAg -3'
miRNA:   3'- acCGGCGAC-CCGCU-CUCgCUU-GUGCU- -5'
9212 5' -59.5 NC_002512.2 + 160847 0.79 0.215461
Target:  5'- cGGCggCGCUGGGCGcagucgcagaGGGGCGGACACGu -3'
miRNA:   3'- aCCG--GCGACCCGC----------UCUCGCUUGUGCu -5'
9212 5' -59.5 NC_002512.2 + 158981 0.66 0.829926
Target:  5'- cGGCgGCcacGGCG-GGGCGGAgGCGGc -3'
miRNA:   3'- aCCGgCGac-CCGCuCUCGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 158564 0.66 0.829926
Target:  5'- gGGCCGCuccUGGcGCGAcAGCGu-CACGu -3'
miRNA:   3'- aCCGGCG---ACC-CGCUcUCGCuuGUGCu -5'
9212 5' -59.5 NC_002512.2 + 157373 0.69 0.686269
Target:  5'- gGGCCGCcGGGCaGGGAcCGGACGaGAu -3'
miRNA:   3'- aCCGGCGaCCCG-CUCUcGCUUGUgCU- -5'
9212 5' -59.5 NC_002512.2 + 157165 0.71 0.58906
Target:  5'- gGGCCGg-GcGGCGuGGGCGGcgGCGCGAc -3'
miRNA:   3'- aCCGGCgaC-CCGCuCUCGCU--UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 156478 0.7 0.608482
Target:  5'- gGGCgGCgggcucGGCGGGcugGGCGGACACGGc -3'
miRNA:   3'- aCCGgCGac----CCGCUC---UCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 156438 0.66 0.867685
Target:  5'- cGGCCggGCUGGGgggcucCGGGGGCG-GCGgGGg -3'
miRNA:   3'- aCCGG--CGACCC------GCUCUCGCuUGUgCU- -5'
9212 5' -59.5 NC_002512.2 + 155871 0.67 0.813637
Target:  5'- cGGCCacGCUGuucguccccgacGGCGGGcGCGGGgACGAg -3'
miRNA:   3'- aCCGG--CGAC------------CCGCUCuCGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 154791 0.71 0.58906
Target:  5'- cUGGCuCGgaGGgaGCGGGAGUGAGCgACGGa -3'
miRNA:   3'- -ACCG-GCgaCC--CGCUCUCGCUUG-UGCU- -5'
9212 5' -59.5 NC_002512.2 + 154699 0.71 0.569752
Target:  5'- cGGCCGUccGGCGucGAGCG-GCGCGAc -3'
miRNA:   3'- aCCGGCGacCCGCu-CUCGCuUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 154561 0.68 0.724419
Target:  5'- cGGUCGCcaUGGGgGGGcaggauaacGGCGAGgGCGAc -3'
miRNA:   3'- aCCGGCG--ACCCgCUC---------UCGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 153377 0.68 0.733797
Target:  5'- cGGCgGCU-GGCGguccGGAGCGAcguggaGCGCGGc -3'
miRNA:   3'- aCCGgCGAcCCGC----UCUCGCU------UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 153123 0.66 0.860496
Target:  5'- cGGUgGCgacGGGCGGGAcggGCGAuccggguCGCGGu -3'
miRNA:   3'- aCCGgCGa--CCCGCUCU---CGCUu------GUGCU- -5'
9212 5' -59.5 NC_002512.2 + 152805 0.69 0.686269
Target:  5'- aGGuCCGCggcgacGGCGGGcGGCGAGCAgGAu -3'
miRNA:   3'- aCC-GGCGac----CCGCUC-UCGCUUGUgCU- -5'
9212 5' -59.5 NC_002512.2 + 150219 0.66 0.83783
Target:  5'- aGGCCGCcGGG-GAG-GCGAu--CGAg -3'
miRNA:   3'- aCCGGCGaCCCgCUCuCGCUuguGCU- -5'
9212 5' -59.5 NC_002512.2 + 149813 0.66 0.860496
Target:  5'- aUGGUCGaggacagcGaGGCgGAGAGCGAcccGCGCGAc -3'
miRNA:   3'- -ACCGGCga------C-CCG-CUCUCGCU---UGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.