Results 81 - 100 of 233 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9212 | 5' | -59.5 | NC_002512.2 | + | 149514 | 0.69 | 0.695887 |
Target: 5'- aGGCCGC--GGCcGGAGCGGGC-CGGc -3' miRNA: 3'- aCCGGCGacCCGcUCUCGCUUGuGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 149414 | 0.81 | 0.165806 |
Target: 5'- gGGCCGCgaggggaccGcGGCGGGGGCGGGCGCGGg -3' miRNA: 3'- aCCGGCGa--------C-CCGCUCUCGCUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 143555 | 0.68 | 0.750469 |
Target: 5'- cGGCCGCgcgucuccccgcGGGCGGGccGGCGGAgAgGGa -3' miRNA: 3'- aCCGGCGa-----------CCCGCUC--UCGCUUgUgCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 140988 | 0.66 | 0.860496 |
Target: 5'- cGGaUCGggGGGCacGGGGGgGAGCGCGGg -3' miRNA: 3'- aCC-GGCgaCCCG--CUCUCgCUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 139277 | 0.67 | 0.779322 |
Target: 5'- cGGCgCGCggGGGCGAaGGgGGGCGCc- -3' miRNA: 3'- aCCG-GCGa-CCCGCUcUCgCUUGUGcu -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 137889 | 0.66 | 0.860496 |
Target: 5'- -cGCCGCcGGcgacGCGGGAGaccCGGACGCGGc -3' miRNA: 3'- acCGGCGaCC----CGCUCUC---GCUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 136080 | 0.67 | 0.779322 |
Target: 5'- cGGCCGggGGGCcGGcuGCGGACGCc- -3' miRNA: 3'- aCCGGCgaCCCGcUCu-CGCUUGUGcu -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 135357 | 0.68 | 0.721592 |
Target: 5'- cUGGCCGUcgaccgcuucguccUGGGCGGGuuCGAAgACGc -3' miRNA: 3'- -ACCGGCG--------------ACCCGCUCucGCUUgUGCu -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 134530 | 0.78 | 0.247601 |
Target: 5'- cGGCguccCGCUGuGGCGAcaGAGCGAGCugGAg -3' miRNA: 3'- aCCG----GCGAC-CCGCU--CUCGCUUGugCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 134084 | 0.69 | 0.666918 |
Target: 5'- cGGCugCGCUGGGCGAGcuacgaGGCGAcgauaagccugACGcCGAg -3' miRNA: 3'- aCCG--GCGACCCGCUC------UCGCU-----------UGU-GCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 133008 | 0.66 | 0.860496 |
Target: 5'- aUGGCCGCcgacggagaacUGGGagaagaCGAcGAGCGAGuCGCGc -3' miRNA: 3'- -ACCGGCG-----------ACCC------GCU-CUCGCUU-GUGCu -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 131999 | 0.66 | 0.860496 |
Target: 5'- gGGCCGCcccGGGCGccGGGgGGACcucgGCGGc -3' miRNA: 3'- aCCGGCGa--CCCGCu-CUCgCUUG----UGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 131676 | 0.75 | 0.383307 |
Target: 5'- gGGCCGCgaGGGCGGuGAGCccgGAGCGCa- -3' miRNA: 3'- aCCGGCGa-CCCGCU-CUCG---CUUGUGcu -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 130852 | 0.7 | 0.647465 |
Target: 5'- cGGCgGUcGGGCGAGGcccccacCGGGCGCGAg -3' miRNA: 3'- aCCGgCGaCCCGCUCUc------GCUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 130589 | 0.66 | 0.845563 |
Target: 5'- aGGCCGCggccucgGaGGCGgaGGAGaCGAagagcccgGCGCGAc -3' miRNA: 3'- aCCGGCGa------C-CCGC--UCUC-GCU--------UGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 130454 | 0.69 | 0.686269 |
Target: 5'- aGGUCGUgucguccgacaGGaGCGGGGGCGGAgACGAa -3' miRNA: 3'- aCCGGCGa----------CC-CGCUCUCGCUUgUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 130251 | 0.68 | 0.743094 |
Target: 5'- cGGgCGCcGGGCccuccGAGGGCGAcgaccgcgacgaGCGCGGg -3' miRNA: 3'- aCCgGCGaCCCG-----CUCUCGCU------------UGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 130149 | 0.69 | 0.705457 |
Target: 5'- cGGCCGCgGGGCccGGcGGCGGGC-CGGc -3' miRNA: 3'- aCCGGCGaCCCG--CUcUCGCUUGuGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 129282 | 0.66 | 0.83783 |
Target: 5'- gGGaCUGggggGGGgGGGAGgGAGCACGGc -3' miRNA: 3'- aCC-GGCga--CCCgCUCUCgCUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 129211 | 0.68 | 0.743094 |
Target: 5'- -cGCCGCUGGccGCgGAGAaCGAACGCGc -3' miRNA: 3'- acCGGCGACC--CG-CUCUcGCUUGUGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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