miRNA display CGI


Results 101 - 120 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 5' -59.5 NC_002512.2 + 128197 0.68 0.724419
Target:  5'- gGGCCGCc-GGCGGGAcCGGGgACGGg -3'
miRNA:   3'- aCCGGCGacCCGCUCUcGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 127903 0.69 0.666918
Target:  5'- aGGUCGCgaccguggGaGGCGAGGGCGGAU-CGGu -3'
miRNA:   3'- aCCGGCGa-------C-CCGCUCUCGCUUGuGCU- -5'
9212 5' -59.5 NC_002512.2 + 127487 0.67 0.82186
Target:  5'- gUGGCCGCcgcccucGGGCGGGAGCa------- -3'
miRNA:   3'- -ACCGGCGa------CCCGCUCUCGcuugugcu -5'
9212 5' -59.5 NC_002512.2 + 127102 0.68 0.761416
Target:  5'- cGGCgGCgGcGGCGGGAGaUGGGCGgGAu -3'
miRNA:   3'- aCCGgCGaC-CCGCUCUC-GCUUGUgCU- -5'
9212 5' -59.5 NC_002512.2 + 126657 0.67 0.805264
Target:  5'- cGGCCGUcgacGGGCGGcGAcGCGAGC-CGc -3'
miRNA:   3'- aCCGGCGa---CCCGCU-CU-CGCUUGuGCu -5'
9212 5' -59.5 NC_002512.2 + 126334 0.66 0.845563
Target:  5'- aGGCCGCcgcguccGGGac-GGGCGcGCACGAc -3'
miRNA:   3'- aCCGGCGa------CCCgcuCUCGCuUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 125391 0.67 0.776665
Target:  5'- cGGaCGCUuccugaaccuccccGGGCccGAGGGCGAACgACGAc -3'
miRNA:   3'- aCCgGCGA--------------CCCG--CUCUCGCUUG-UGCU- -5'
9212 5' -59.5 NC_002512.2 + 123552 0.69 0.67661
Target:  5'- cGGgCGCggacgucgaGGGgGAGAGCGAcggGCugGAc -3'
miRNA:   3'- aCCgGCGa--------CCCgCUCUCGCU---UGugCU- -5'
9212 5' -59.5 NC_002512.2 + 123531 0.7 0.637719
Target:  5'- gGGCCGCgagGuGGCGAGcucGCGGGacgaGCGAc -3'
miRNA:   3'- aCCGGCGa--C-CCGCUCu--CGCUUg---UGCU- -5'
9212 5' -59.5 NC_002512.2 + 123149 0.71 0.550602
Target:  5'- aGcGCCGCcgGGGcCGAGgaGGCGGACAgGAg -3'
miRNA:   3'- aC-CGGCGa-CCC-GCUC--UCGCUUGUgCU- -5'
9212 5' -59.5 NC_002512.2 + 123123 0.76 0.330701
Target:  5'- -cGCCGC-GGGcCGAGAGCcGGACGCGGa -3'
miRNA:   3'- acCGGCGaCCC-GCUCUCG-CUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 122889 0.67 0.794168
Target:  5'- cGGCCGaccccggcccGGGCGucccggccuucuacGGGGaCGAGCGCGAg -3'
miRNA:   3'- aCCGGCga--------CCCGC--------------UCUC-GCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 122765 0.68 0.761416
Target:  5'- gGGCCGgaGGaCGAGGaCGAGgACGAg -3'
miRNA:   3'- aCCGGCgaCCcGCUCUcGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 122325 0.71 0.58906
Target:  5'- gUGGCC-CUGaGGCGGGGGaCGGACaACGu -3'
miRNA:   3'- -ACCGGcGAC-CCGCUCUC-GCUUG-UGCu -5'
9212 5' -59.5 NC_002512.2 + 121885 0.69 0.718758
Target:  5'- aGGUCGCggGGGaCGcucggcgacgcgcggGGAGCGAGCGgGAc -3'
miRNA:   3'- aCCGGCGa-CCC-GC---------------UCUCGCUUGUgCU- -5'
9212 5' -59.5 NC_002512.2 + 121242 0.66 0.848607
Target:  5'- gUGGaCCGCcccgUGGGUcccguugcaggucagGAGgaAGCGGACGCGGu -3'
miRNA:   3'- -ACC-GGCG----ACCCG---------------CUC--UCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 121160 0.71 0.58906
Target:  5'- cGGCCGCggcccaGGGCGAGGcguucuCGGACgACGAc -3'
miRNA:   3'- aCCGGCGa-----CCCGCUCUc-----GCUUG-UGCU- -5'
9212 5' -59.5 NC_002512.2 + 121005 0.71 0.58906
Target:  5'- cGGCagaGCgaagcgGGGCGugcugaccucGGGCGAGCGCGAc -3'
miRNA:   3'- aCCGg--CGa-----CCCGCu---------CUCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 120782 0.7 0.657201
Target:  5'- cGGCCGUc-GGCGGGGGCGGcgGgACGGc -3'
miRNA:   3'- aCCGGCGacCCGCUCUCGCU--UgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 119410 0.66 0.853121
Target:  5'- cGuGCCGCUGcuCGGGAGCGuggacCGCGGg -3'
miRNA:   3'- aC-CGGCGACccGCUCUCGCuu---GUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.