miRNA display CGI


Results 121 - 140 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 5' -59.5 NC_002512.2 + 119198 0.66 0.853121
Target:  5'- cUGGCC-CUGcGGCGGcuGcGCGAGCACc- -3'
miRNA:   3'- -ACCGGcGAC-CCGCU--CuCGCUUGUGcu -5'
9212 5' -59.5 NC_002512.2 + 118789 0.68 0.721592
Target:  5'- -cGCCGCcGGGCGGGAGCuguGGGCccccgucguggucgGCGAc -3'
miRNA:   3'- acCGGCGaCCCGCUCUCG---CUUG--------------UGCU- -5'
9212 5' -59.5 NC_002512.2 + 118116 0.72 0.522269
Target:  5'- cGGCCguaucGCUgacgggggaggGGGCGGGGGCGGAacCGCGAc -3'
miRNA:   3'- aCCGG-----CGA-----------CCCGCUCUCGCUU--GUGCU- -5'
9212 5' -59.5 NC_002512.2 + 117003 0.66 0.860496
Target:  5'- cGGCCGCacgcaGGGCGGGcgcaagaucaucGGCGGcCGgGAg -3'
miRNA:   3'- aCCGGCGa----CCCGCUC------------UCGCUuGUgCU- -5'
9212 5' -59.5 NC_002512.2 + 116891 0.71 0.58906
Target:  5'- cUGGCgGCgGGGCcGGGGCGGGCuccuCGGa -3'
miRNA:   3'- -ACCGgCGaCCCGcUCUCGCUUGu---GCU- -5'
9212 5' -59.5 NC_002512.2 + 115467 0.66 0.837047
Target:  5'- cGGaCCGCgUGGGagccgguCGAGA-UGAGCGCGAg -3'
miRNA:   3'- aCC-GGCG-ACCC-------GCUCUcGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 115283 0.68 0.770425
Target:  5'- cUGGCCG--GGGUGAucGUGAGCACGc -3'
miRNA:   3'- -ACCGGCgaCCCGCUcuCGCUUGUGCu -5'
9212 5' -59.5 NC_002512.2 + 114258 0.66 0.845563
Target:  5'- cGGCUGCgcgaGGCGAGAauccuCGAacgGCGCGAu -3'
miRNA:   3'- aCCGGCGac--CCGCUCUc----GCU---UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 113660 0.66 0.83783
Target:  5'- cGGCCGgcc-GCGAGGGUGcGCGCGGg -3'
miRNA:   3'- aCCGGCgaccCGCUCUCGCuUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 112901 0.66 0.838611
Target:  5'- cGGCCGUcggcccgcccggacgGGGCGucGGCGGcccgguggcGCGCGAg -3'
miRNA:   3'- aCCGGCGa--------------CCCGCucUCGCU---------UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 111335 0.67 0.805264
Target:  5'- -uGCCGUUGuuGGCGucccGGGCGcGCACGAg -3'
miRNA:   3'- acCGGCGAC--CCGCu---CUCGCuUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 111289 0.67 0.82186
Target:  5'- cGGCCGCcgcgGGGaGAGGGCcgccGAuCGCGGc -3'
miRNA:   3'- aCCGGCGa---CCCgCUCUCG----CUuGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 111234 0.68 0.752303
Target:  5'- gGGCgGCcGGGCGcccGGAGCGucgggcggcACGCGGa -3'
miRNA:   3'- aCCGgCGaCCCGC---UCUCGCu--------UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 110263 0.79 0.225758
Target:  5'- aGcGCCGCgcugGGGCGGGAgGCGAGCgGCGAg -3'
miRNA:   3'- aC-CGGCGa---CCCGCUCU-CGCUUG-UGCU- -5'
9212 5' -59.5 NC_002512.2 + 109793 0.75 0.37546
Target:  5'- cGGgCGCcaGGGgGAGGGCGAACAgGAu -3'
miRNA:   3'- aCCgGCGa-CCCgCUCUCGCUUGUgCU- -5'
9212 5' -59.5 NC_002512.2 + 108493 0.66 0.860496
Target:  5'- cGGUCGUcaaGGGCGAGGcCGGGCcCGGc -3'
miRNA:   3'- aCCGGCGa--CCCGCUCUcGCUUGuGCU- -5'
9212 5' -59.5 NC_002512.2 + 108427 0.66 0.829926
Target:  5'- cGGCgGC-GGGCGcGGGGCGGACc--- -3'
miRNA:   3'- aCCGgCGaCCCGC-UCUCGCUUGugcu -5'
9212 5' -59.5 NC_002512.2 + 108398 0.67 0.788099
Target:  5'- aGcCCGgUGGGUGGGGGgGAGgACGGg -3'
miRNA:   3'- aCcGGCgACCCGCUCUCgCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 107849 0.68 0.743094
Target:  5'- -cGCCGCcccGGGCGuGcGCGAGCGcCGAu -3'
miRNA:   3'- acCGGCGa--CCCGCuCuCGCUUGU-GCU- -5'
9212 5' -59.5 NC_002512.2 + 107726 0.66 0.853121
Target:  5'- aGGUCGCagaggUGGGUGcgguGGcAGCGGACGCa- -3'
miRNA:   3'- aCCGGCG-----ACCCGC----UC-UCGCUUGUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.