miRNA display CGI


Results 141 - 160 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 5' -59.5 NC_002512.2 + 107005 0.66 0.829926
Target:  5'- gGGCCGggGucGGcCGAGAGCcGGGCGCGc -3'
miRNA:   3'- aCCGGCgaC--CC-GCUCUCG-CUUGUGCu -5'
9212 5' -59.5 NC_002512.2 + 106456 0.66 0.867685
Target:  5'- -cGCCuGUcGGGgGAucGCGAACACGAa -3'
miRNA:   3'- acCGG-CGaCCCgCUcuCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 105870 0.67 0.82186
Target:  5'- gUGGCCcagGGGC-AGcGCGAACACGc -3'
miRNA:   3'- -ACCGGcgaCCCGcUCuCGCUUGUGCu -5'
9212 5' -59.5 NC_002512.2 + 105790 0.74 0.407492
Target:  5'- aUGGUCGac-GGCGAGGGCGAAgACGGc -3'
miRNA:   3'- -ACCGGCgacCCGCUCUCGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 105650 0.67 0.788099
Target:  5'- cGGCCGagguaGGGCGAGccgcAGCaGAcgGCGCGGu -3'
miRNA:   3'- aCCGGCga---CCCGCUC----UCG-CU--UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 105204 0.67 0.805264
Target:  5'- aGGCCGUguaGaGGUccGAGCuGAGCGCGAa -3'
miRNA:   3'- aCCGGCGa--C-CCGcuCUCG-CUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 103693 0.67 0.796749
Target:  5'- gGGCgGCggacGcGGCGGGAGgGGGCGCc- -3'
miRNA:   3'- aCCGgCGa---C-CCGCUCUCgCUUGUGcu -5'
9212 5' -59.5 NC_002512.2 + 103324 0.68 0.752303
Target:  5'- cGGCCGaggcccGGGCGgcguagcccGGGGCGGacgGCACGGu -3'
miRNA:   3'- aCCGGCga----CCCGC---------UCUCGCU---UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 103018 0.66 0.828326
Target:  5'- aGGCCGCguaguccaccacGGGCucguagaagaccGGGGGCagGAGCGCGGg -3'
miRNA:   3'- aCCGGCGa-----------CCCG------------CUCUCG--CUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 100966 0.71 0.550602
Target:  5'- aGGUCGCUgucgaGGGCGGGAaagGCGAcCACGu -3'
miRNA:   3'- aCCGGCGA-----CCCGCUCU---CGCUuGUGCu -5'
9212 5' -59.5 NC_002512.2 + 100071 0.67 0.796749
Target:  5'- gGGCCGCgggccgGGGaCG-GAGCGGuCAgGGg -3'
miRNA:   3'- aCCGGCGa-----CCC-GCuCUCGCUuGUgCU- -5'
9212 5' -59.5 NC_002512.2 + 100049 0.66 0.83783
Target:  5'- cGGgCGCUGagacGCGGGGGCGGcgGCGcCGAc -3'
miRNA:   3'- aCCgGCGACc---CGCUCUCGCU--UGU-GCU- -5'
9212 5' -59.5 NC_002512.2 + 98774 0.67 0.825106
Target:  5'- cUGGCCGUcgGGGgGcagcuguucaaugucAGAGCGugUACGAc -3'
miRNA:   3'- -ACCGGCGa-CCCgC---------------UCUCGCuuGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 97381 0.75 0.360094
Target:  5'- cGGCgGCcGGaGaCGGGGGCGGGCGCGAc -3'
miRNA:   3'- aCCGgCGaCC-C-GCUCUCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 97317 0.73 0.485416
Target:  5'- cUGGCCGCgcccgccgGGGuCGAGGGCGGAgAggcCGAc -3'
miRNA:   3'- -ACCGGCGa-------CCC-GCUCUCGCUUgU---GCU- -5'
9212 5' -59.5 NC_002512.2 + 96618 0.67 0.779322
Target:  5'- cGGagaCGC-GGGgGAGGGCGAGgaaacCGCGAc -3'
miRNA:   3'- aCCg--GCGaCCCgCUCUCGCUU-----GUGCU- -5'
9212 5' -59.5 NC_002512.2 + 96301 0.67 0.796749
Target:  5'- gGGCCGCcgccgcGGGCGGGccGGuCGccGCACGAc -3'
miRNA:   3'- aCCGGCGa-----CCCGCUC--UC-GCu-UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 96226 0.68 0.770425
Target:  5'- cGGCCGCgGcGGCGGcGGCGAcCGCc- -3'
miRNA:   3'- aCCGGCGaC-CCGCUcUCGCUuGUGcu -5'
9212 5' -59.5 NC_002512.2 + 95768 0.72 0.522269
Target:  5'- cGGCCGCcuggacggGGGCGuccGAGCGGuaggcgccgggGCGCGGa -3'
miRNA:   3'- aCCGGCGa-------CCCGCu--CUCGCU-----------UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 93619 0.66 0.853121
Target:  5'- cGGCCGUUGGaCGGGcGCGuGCuCGGu -3'
miRNA:   3'- aCCGGCGACCcGCUCuCGCuUGuGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.