miRNA display CGI


Results 81 - 100 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 5' -59.5 NC_002512.2 + 36676 0.68 0.724419
Target:  5'- aGGCUGCcGGGCaacGGCGAGC-CGAa -3'
miRNA:   3'- aCCGGCGaCCCGcucUCGCUUGuGCU- -5'
9212 5' -59.5 NC_002512.2 + 22178 0.68 0.733797
Target:  5'- cGG-CGCU-GGCGAuGGCGAugACGAu -3'
miRNA:   3'- aCCgGCGAcCCGCUcUCGCUugUGCU- -5'
9212 5' -59.5 NC_002512.2 + 6321 0.68 0.743094
Target:  5'- gUGGCCGCcGcccGCGGGGGgacCGGGCGCGGg -3'
miRNA:   3'- -ACCGGCGaCc--CGCUCUC---GCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 27977 0.68 0.752303
Target:  5'- gGGCgGCcGGGCGAGAuucCG-GCGCGGg -3'
miRNA:   3'- aCCGgCGaCCCGCUCUc--GCuUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 28056 0.67 0.775777
Target:  5'- cGGCCGCggaaggagcccccGGGCGc-GGCGGAgACGGc -3'
miRNA:   3'- aCCGGCGa------------CCCGCucUCGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 78396 0.67 0.796749
Target:  5'- aGGCCgGCUGGagauCGAGAGCGcGGgAUGAc -3'
miRNA:   3'- aCCGG-CGACCc---GCUCUCGC-UUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 33644 0.67 0.805264
Target:  5'- aGGCgCGCgcGGGCGc-GGCGGACAgGGu -3'
miRNA:   3'- aCCG-GCGa-CCCGCucUCGCUUGUgCU- -5'
9212 5' -59.5 NC_002512.2 + 130852 0.7 0.647465
Target:  5'- cGGCgGUcGGGCGAGGcccccacCGGGCGCGAg -3'
miRNA:   3'- aCCGgCGaCCCGCUCUc------GCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 47025 0.7 0.627968
Target:  5'- gGaGCUGCUGGGCGAgcuGAG-GAaGCACGGg -3'
miRNA:   3'- aC-CGGCGACCCGCU---CUCgCU-UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 25415 0.7 0.61822
Target:  5'- aGGgCGUUacGGGCGuagacccGGGCGAACGCGGg -3'
miRNA:   3'- aCCgGCGA--CCCGCu------CUCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 115467 0.66 0.837047
Target:  5'- cGGaCCGCgUGGGagccgguCGAGA-UGAGCGCGAg -3'
miRNA:   3'- aCC-GGCG-ACCC-------GCUCUcGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 51713 0.66 0.845563
Target:  5'- aUGGCCG-UGGaCGAGA-CGAACGuCGAa -3'
miRNA:   3'- -ACCGGCgACCcGCUCUcGCUUGU-GCU- -5'
9212 5' -59.5 NC_002512.2 + 93619 0.66 0.853121
Target:  5'- cGGCCGUUGGaCGGGcGCGuGCuCGGu -3'
miRNA:   3'- aCCGGCGACCcGCUCuCGCuUGuGCU- -5'
9212 5' -59.5 NC_002512.2 + 229585 0.66 0.860496
Target:  5'- aGGCCGgaGGGCGuGGGCugccCugGc -3'
miRNA:   3'- aCCGGCgaCCCGCuCUCGcuu-GugCu -5'
9212 5' -59.5 NC_002512.2 + 35281 0.66 0.860496
Target:  5'- cGGCCGCgGcGGCGGaGGCGAuCAUc- -3'
miRNA:   3'- aCCGGCGaC-CCGCUcUCGCUuGUGcu -5'
9212 5' -59.5 NC_002512.2 + 109793 0.75 0.37546
Target:  5'- cGGgCGCcaGGGgGAGGGCGAACAgGAu -3'
miRNA:   3'- aCCgGCGa-CCCgCUCUCGCUUGUgCU- -5'
9212 5' -59.5 NC_002512.2 + 2078 0.73 0.485416
Target:  5'- cGGaguccaCGCcGGGCGGGAGCGGGCgguACGGc -3'
miRNA:   3'- aCCg-----GCGaCCCGCUCUCGCUUG---UGCU- -5'
9212 5' -59.5 NC_002512.2 + 60751 0.72 0.503697
Target:  5'- cGGCgGCcGGGCGGacGAG-GAGCGCGAc -3'
miRNA:   3'- aCCGgCGaCCCGCU--CUCgCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 21250 0.71 0.569752
Target:  5'- gGGCggagaggGCUGGaGCGGGAGCGGgggacgacaGCACGGa -3'
miRNA:   3'- aCCGg------CGACC-CGCUCUCGCU---------UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 80682 0.71 0.58906
Target:  5'- cGGCgGCgacggGGGCGAGcggcguccggggGGCGAgggcGCGCGGg -3'
miRNA:   3'- aCCGgCGa----CCCGCUC------------UCGCU----UGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.