miRNA display CGI


Results 101 - 120 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 5' -59.5 NC_002512.2 + 21250 0.71 0.569752
Target:  5'- gGGCggagaggGCUGGaGCGGGAGCGGgggacgacaGCACGGa -3'
miRNA:   3'- aCCGg------CGACC-CGCUCUCGCU---------UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 80682 0.71 0.58906
Target:  5'- cGGCgGCgacggGGGCGAGcggcguccggggGGCGAgggcGCGCGGg -3'
miRNA:   3'- aCCGgCGa----CCCGCUC------------UCGCU----UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 25415 0.7 0.61822
Target:  5'- aGGgCGUUacGGGCGuagacccGGGCGAACGCGGg -3'
miRNA:   3'- aCCgGCGA--CCCGCu------CUCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 47025 0.7 0.627968
Target:  5'- gGaGCUGCUGGGCGAgcuGAG-GAaGCACGGg -3'
miRNA:   3'- aC-CGGCGACCCGCU---CUCgCU-UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 130852 0.7 0.647465
Target:  5'- cGGCgGUcGGGCGAGGcccccacCGGGCGCGAg -3'
miRNA:   3'- aCCGgCGaCCCGCUCUc------GCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 57041 0.69 0.680478
Target:  5'- aGGCCGCguccgacgaccgggGGGCGccGGGCGAACGg-- -3'
miRNA:   3'- aCCGGCGa-------------CCCGCu-CUCGCUUGUgcu -5'
9212 5' -59.5 NC_002512.2 + 91935 0.66 0.844797
Target:  5'- cGGCCGacuuggucUUGGGCGcgaucgccagggcGGAGCG-GCACGu -3'
miRNA:   3'- aCCGGC--------GACCCGC-------------UCUCGCuUGUGCu -5'
9212 5' -59.5 NC_002512.2 + 105790 0.74 0.407492
Target:  5'- aUGGUCGac-GGCGAGGGCGAAgACGGc -3'
miRNA:   3'- -ACCGGCgacCCGCUCUCGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 131676 0.75 0.383307
Target:  5'- gGGCCGCgaGGGCGGuGAGCccgGAGCGCa- -3'
miRNA:   3'- aCCGGCGa-CCCGCU-CUCG---CUUGUGcu -5'
9212 5' -59.5 NC_002512.2 + 74647 0.74 0.43261
Target:  5'- -cGCCGCgacGGGCGGGAcggccGCGGGCGCGu -3'
miRNA:   3'- acCGGCGa--CCCGCUCU-----CGCUUGUGCu -5'
9212 5' -59.5 NC_002512.2 + 213635 0.75 0.383307
Target:  5'- uUGGCCGCcgcGGGCGAcGGCGAcgACGAc -3'
miRNA:   3'- -ACCGGCGa--CCCGCUcUCGCUugUGCU- -5'
9212 5' -59.5 NC_002512.2 + 168134 0.76 0.33356
Target:  5'- cGGCCGCggcgagGGGCuggggguggggggcgGAGAGgGGACGCGGc -3'
miRNA:   3'- aCCGGCGa-----CCCG---------------CUCUCgCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 202526 0.67 0.779322
Target:  5'- aGGCgGC--GGCGGGGGCGGACGa-- -3'
miRNA:   3'- aCCGgCGacCCGCUCUCGCUUGUgcu -5'
9212 5' -59.5 NC_002512.2 + 96618 0.67 0.779322
Target:  5'- cGGagaCGC-GGGgGAGGGCGAGgaaacCGCGAc -3'
miRNA:   3'- aCCg--GCGaCCCgCUCUCGCUU-----GUGCU- -5'
9212 5' -59.5 NC_002512.2 + 222329 0.68 0.773998
Target:  5'- aGGCUGCgGcGGCGccuccaggaggaggaGGAGCG-GCACGGg -3'
miRNA:   3'- aCCGGCGaC-CCGC---------------UCUCGCuUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 96226 0.68 0.770425
Target:  5'- cGGCCGCgGcGGCGGcGGCGAcCGCc- -3'
miRNA:   3'- aCCGGCGaC-CCGCUcUCGCUuGUGcu -5'
9212 5' -59.5 NC_002512.2 + 204724 0.66 0.829926
Target:  5'- gGGCC-CgGGGCGGGGGgcCGGACcCGGg -3'
miRNA:   3'- aCCGGcGaCCCGCUCUC--GCUUGuGCU- -5'
9212 5' -59.5 NC_002512.2 + 220024 0.66 0.853121
Target:  5'- aGGCCGCUccgucucgGGGUccGGGCGAucucgACAUGGc -3'
miRNA:   3'- aCCGGCGA--------CCCGcuCUCGCU-----UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 125391 0.67 0.776665
Target:  5'- cGGaCGCUuccugaaccuccccGGGCccGAGGGCGAACgACGAc -3'
miRNA:   3'- aCCgGCGA--------------CCCG--CUCUCGCUUG-UGCU- -5'
9212 5' -59.5 NC_002512.2 + 129282 0.66 0.83783
Target:  5'- gGGaCUGggggGGGgGGGAGgGAGCACGGc -3'
miRNA:   3'- aCC-GGCga--CCCgCUCUCgCUUGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.