miRNA display CGI


Results 121 - 140 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 5' -59.5 NC_002512.2 + 96618 0.67 0.779322
Target:  5'- cGGagaCGC-GGGgGAGGGCGAGgaaacCGCGAc -3'
miRNA:   3'- aCCg--GCGaCCCgCUCUCGCUU-----GUGCU- -5'
9212 5' -59.5 NC_002512.2 + 220024 0.66 0.853121
Target:  5'- aGGCCGCUccgucucgGGGUccGGGCGAucucgACAUGGc -3'
miRNA:   3'- aCCGGCGA--------CCCGcuCUCGCU-----UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 134530 0.78 0.247601
Target:  5'- cGGCguccCGCUGuGGCGAcaGAGCGAGCugGAg -3'
miRNA:   3'- aCCG----GCGAC-CCGCU--CUCGCUUGugCU- -5'
9212 5' -59.5 NC_002512.2 + 227612 0.77 0.277331
Target:  5'- cGGCCGgaGGGCGGGcGGCGGcgGCGAg -3'
miRNA:   3'- aCCGGCgaCCCGCUC-UCGCUugUGCU- -5'
9212 5' -59.5 NC_002512.2 + 129282 0.66 0.83783
Target:  5'- gGGaCUGggggGGGgGGGAGgGAGCACGGc -3'
miRNA:   3'- aCC-GGCga--CCCgCUCUCgCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 160932 0.66 0.83783
Target:  5'- -aGUCGCUGcGGCGGuGGGgGGGuCACGAg -3'
miRNA:   3'- acCGGCGAC-CCGCU-CUCgCUU-GUGCU- -5'
9212 5' -59.5 NC_002512.2 + 125391 0.67 0.776665
Target:  5'- cGGaCGCUuccugaaccuccccGGGCccGAGGGCGAACgACGAc -3'
miRNA:   3'- aCCgGCGA--------------CCCG--CUCUCGCUUG-UGCU- -5'
9212 5' -59.5 NC_002512.2 + 150219 0.66 0.83783
Target:  5'- aGGCCGCcGGG-GAG-GCGAu--CGAg -3'
miRNA:   3'- aCCGGCGaCCCgCUCuCGCUuguGCU- -5'
9212 5' -59.5 NC_002512.2 + 100966 0.71 0.550602
Target:  5'- aGGUCGCUgucgaGGGCGGGAaagGCGAcCACGu -3'
miRNA:   3'- aCCGGCGA-----CCCGCUCU---CGCUuGUGCu -5'
9212 5' -59.5 NC_002512.2 + 228210 0.72 0.541101
Target:  5'- aGGCCGCggucgaggccGGGCGAGAcgGCGGGaaggGCGAa -3'
miRNA:   3'- aCCGGCGa---------CCCGCUCU--CGCUUg---UGCU- -5'
9212 5' -59.5 NC_002512.2 + 95768 0.72 0.522269
Target:  5'- cGGCCGCcuggacggGGGCGuccGAGCGGuaggcgccgggGCGCGGa -3'
miRNA:   3'- aCCGGCGa-------CCCGCu--CUCGCU-----------UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 190888 0.72 0.503697
Target:  5'- cGcGUCGCgGGGCGAG-GCGAAC-CGGa -3'
miRNA:   3'- aC-CGGCGaCCCGCUCuCGCUUGuGCU- -5'
9212 5' -59.5 NC_002512.2 + 201665 0.72 0.490868
Target:  5'- cGGCCGCgguuccuucuucGGCGAGGGCGGcCGCGu -3'
miRNA:   3'- aCCGGCGac----------CCGCUCUCGCUuGUGCu -5'
9212 5' -59.5 NC_002512.2 + 228416 0.73 0.441181
Target:  5'- gGGgCGCUgggGGGCGGGGGCGGGaACGGg -3'
miRNA:   3'- aCCgGCGA---CCCGCUCUCGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 74647 0.74 0.43261
Target:  5'- -cGCCGCgacGGGCGGGAcggccGCGGGCGCGu -3'
miRNA:   3'- acCGGCGa--CCCGCUCU-----CGCUUGUGCu -5'
9212 5' -59.5 NC_002512.2 + 105790 0.74 0.407492
Target:  5'- aUGGUCGac-GGCGAGGGCGAAgACGGc -3'
miRNA:   3'- -ACCGGCgacCCGCUCUCGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 131676 0.75 0.383307
Target:  5'- gGGCCGCgaGGGCGGuGAGCccgGAGCGCa- -3'
miRNA:   3'- aCCGGCGa-CCCGCU-CUCG---CUUGUGcu -5'
9212 5' -59.5 NC_002512.2 + 213635 0.75 0.383307
Target:  5'- uUGGCCGCcgcGGGCGAcGGCGAcgACGAc -3'
miRNA:   3'- -ACCGGCGa--CCCGCUcUCGCUugUGCU- -5'
9212 5' -59.5 NC_002512.2 + 168134 0.76 0.33356
Target:  5'- cGGCCGCggcgagGGGCuggggguggggggcgGAGAGgGGACGCGGc -3'
miRNA:   3'- aCCGGCGa-----CCCG---------------CUCUCgCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 191291 0.71 0.550602
Target:  5'- gGGCgGCgGGGCGGGGGaCGGgggccgggACGCGGg -3'
miRNA:   3'- aCCGgCGaCCCGCUCUC-GCU--------UGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.