miRNA display CGI


Results 141 - 160 of 233 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 5' -59.5 NC_002512.2 + 154699 0.71 0.569752
Target:  5'- cGGCCGUccGGCGucGAGCG-GCGCGAc -3'
miRNA:   3'- aCCGGCGacCCGCu-CUCGCuUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 185221 0.71 0.578423
Target:  5'- gUGGcCCGCgucguggaacgcgUGGGCGAGAGCcucGAcCGCGGu -3'
miRNA:   3'- -ACC-GGCG-------------ACCCGCUCUCG---CUuGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 122325 0.71 0.58906
Target:  5'- gUGGCC-CUGaGGCGGGGGaCGGACaACGu -3'
miRNA:   3'- -ACCGGcGAC-CCGCUCUC-GCUUG-UGCu -5'
9212 5' -59.5 NC_002512.2 + 121005 0.71 0.58906
Target:  5'- cGGCagaGCgaagcgGGGCGugcugaccucGGGCGAGCGCGAc -3'
miRNA:   3'- aCCGg--CGa-----CCCGCu---------CUCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 121160 0.71 0.58906
Target:  5'- cGGCCGCggcccaGGGCGAGGcguucuCGGACgACGAc -3'
miRNA:   3'- aCCGGCGa-----CCCGCUCUc-----GCUUG-UGCU- -5'
9212 5' -59.5 NC_002512.2 + 190888 0.72 0.503697
Target:  5'- cGcGUCGCgGGGCGAG-GCGAAC-CGGa -3'
miRNA:   3'- aC-CGGCGaCCCGCUCuCGCUUGuGCU- -5'
9212 5' -59.5 NC_002512.2 + 226726 0.67 0.788099
Target:  5'- aGGCCGC-GGGCGAcgacGGCgGGAC-CGGg -3'
miRNA:   3'- aCCGGCGaCCCGCUc---UCG-CUUGuGCU- -5'
9212 5' -59.5 NC_002512.2 + 129282 0.66 0.83783
Target:  5'- gGGaCUGggggGGGgGGGAGgGAGCACGGc -3'
miRNA:   3'- aCC-GGCga--CCCgCUCUCgCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 204724 0.66 0.829926
Target:  5'- gGGCC-CgGGGCGGGGGgcCGGACcCGGg -3'
miRNA:   3'- aCCGGcGaCCCGCUCUC--GCUUGuGCU- -5'
9212 5' -59.5 NC_002512.2 + 228487 0.71 0.579389
Target:  5'- gGGaccgaagaCGCggagGGGCGAGAG-GGACGCGGa -3'
miRNA:   3'- aCCg-------GCGa---CCCGCUCUCgCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 149414 0.81 0.165806
Target:  5'- gGGCCGCgaggggaccGcGGCGGGGGCGGGCGCGGg -3'
miRNA:   3'- aCCGGCGa--------C-CCGCUCUCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 160847 0.79 0.215461
Target:  5'- cGGCggCGCUGGGCGcagucgcagaGGGGCGGACACGu -3'
miRNA:   3'- aCCG--GCGACCCGC----------UCUCGCUUGUGCu -5'
9212 5' -59.5 NC_002512.2 + 193448 0.79 0.215461
Target:  5'- cGGCCGCcgGuGGCGGGAGCGGGCccuccgggACGAg -3'
miRNA:   3'- aCCGGCGa-C-CCGCUCUCGCUUG--------UGCU- -5'
9212 5' -59.5 NC_002512.2 + 134530 0.78 0.247601
Target:  5'- cGGCguccCGCUGuGGCGAcaGAGCGAGCugGAg -3'
miRNA:   3'- aCCG----GCGAC-CCGCU--CUCGCUUGugCU- -5'
9212 5' -59.5 NC_002512.2 + 227612 0.77 0.277331
Target:  5'- cGGCCGgaGGGCGGGcGGCGGcgGCGAg -3'
miRNA:   3'- aCCGGCgaCCCGCUC-UCGCUugUGCU- -5'
9212 5' -59.5 NC_002512.2 + 213635 0.75 0.383307
Target:  5'- uUGGCCGCcgcGGGCGAcGGCGAcgACGAc -3'
miRNA:   3'- -ACCGGCGa--CCCGCUcUCGCUugUGCU- -5'
9212 5' -59.5 NC_002512.2 + 131676 0.75 0.383307
Target:  5'- gGGCCGCgaGGGCGGuGAGCccgGAGCGCa- -3'
miRNA:   3'- aCCGGCGa-CCCGCU-CUCG---CUUGUGcu -5'
9212 5' -59.5 NC_002512.2 + 105790 0.74 0.407492
Target:  5'- aUGGUCGac-GGCGAGGGCGAAgACGGc -3'
miRNA:   3'- -ACCGGCgacCCGCUCUCGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 74647 0.74 0.43261
Target:  5'- -cGCCGCgacGGGCGGGAcggccGCGGGCGCGu -3'
miRNA:   3'- acCGGCGa--CCCGCUCU-----CGCUUGUGCu -5'
9212 5' -59.5 NC_002512.2 + 228416 0.73 0.441181
Target:  5'- gGGgCGCUgggGGGCGGGGGCGGGaACGGg -3'
miRNA:   3'- aCCgGCGA---CCCGCUCUCGCUUgUGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.