miRNA display CGI


Results 161 - 180 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 5' -59.5 NC_002512.2 + 190888 0.72 0.503697
Target:  5'- cGcGUCGCgGGGCGAG-GCGAAC-CGGa -3'
miRNA:   3'- aC-CGGCGaCCCGCUCuCGCUUGuGCU- -5'
9212 5' -59.5 NC_002512.2 + 201665 0.72 0.490868
Target:  5'- cGGCCGCgguuccuucuucGGCGAGGGCGGcCGCGu -3'
miRNA:   3'- aCCGGCGac----------CCGCUCUCGCUuGUGCu -5'
9212 5' -59.5 NC_002512.2 + 228416 0.73 0.441181
Target:  5'- gGGgCGCUgggGGGCGGGGGCGGGaACGGg -3'
miRNA:   3'- aCCgGCGA---CCCGCUCUCGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 74647 0.74 0.43261
Target:  5'- -cGCCGCgacGGGCGGGAcggccGCGGGCGCGu -3'
miRNA:   3'- acCGGCGa--CCCGCUCU-----CGCUUGUGCu -5'
9212 5' -59.5 NC_002512.2 + 228487 0.71 0.579389
Target:  5'- gGGaccgaagaCGCggagGGGCGAGAG-GGACGCGGa -3'
miRNA:   3'- aCCg-------GCGa---CCCGCUCUCgCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 122325 0.71 0.58906
Target:  5'- gUGGCC-CUGaGGCGGGGGaCGGACaACGu -3'
miRNA:   3'- -ACCGGcGAC-CCGCUCUC-GCUUG-UGCu -5'
9212 5' -59.5 NC_002512.2 + 96226 0.68 0.770425
Target:  5'- cGGCCGCgGcGGCGGcGGCGAcCGCc- -3'
miRNA:   3'- aCCGGCGaC-CCGCUcUCGCUuGUGcu -5'
9212 5' -59.5 NC_002512.2 + 228064 0.69 0.666918
Target:  5'- cGGCUGC-GGcGCGGGAGaCGAcgggcugcACACGGu -3'
miRNA:   3'- aCCGGCGaCC-CGCUCUC-GCU--------UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 134084 0.69 0.666918
Target:  5'- cGGCugCGCUGGGCGAGcuacgaGGCGAcgauaagccugACGcCGAg -3'
miRNA:   3'- aCCG--GCGACCCGCUC------UCGCU-----------UGU-GCU- -5'
9212 5' -59.5 NC_002512.2 + 225802 0.7 0.647465
Target:  5'- gGGCCGC-GGGCGGccGGGUGGcCugGGa -3'
miRNA:   3'- aCCGGCGaCCCGCU--CUCGCUuGugCU- -5'
9212 5' -59.5 NC_002512.2 + 123531 0.7 0.637719
Target:  5'- gGGCCGCgagGuGGCGAGcucGCGGGacgaGCGAc -3'
miRNA:   3'- aCCGGCGa--C-CCGCUCu--CGCUUg---UGCU- -5'
9212 5' -59.5 NC_002512.2 + 171854 0.7 0.61822
Target:  5'- cGGCCGCggccGGGaGGGGGCgGAACGCc- -3'
miRNA:   3'- aCCGGCGa---CCCgCUCUCG-CUUGUGcu -5'
9212 5' -59.5 NC_002512.2 + 90935 0.7 0.61822
Target:  5'- cGGgCGCgaccgGGGCGuGcGUGGGCGCGAc -3'
miRNA:   3'- aCCgGCGa----CCCGCuCuCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 215168 0.7 0.608482
Target:  5'- cUGGCCGUccUGcuGCucgGGGAGCGGACGCGGg -3'
miRNA:   3'- -ACCGGCG--ACc-CG---CUCUCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 156478 0.7 0.608482
Target:  5'- gGGCgGCgggcucGGCGGGcugGGCGGACACGGc -3'
miRNA:   3'- aCCGgCGac----CCGCUC---UCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 91872 0.7 0.608482
Target:  5'- aGGCCGCcguccGGCGcGGGCGGcgGCGCGGc -3'
miRNA:   3'- aCCGGCGac---CCGCuCUCGCU--UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 228118 0.71 0.58906
Target:  5'- cGGCCGCaacgucgugcUGGGCGccGA-CGGGCGCGAg -3'
miRNA:   3'- aCCGGCG----------ACCCGCu-CUcGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 157165 0.71 0.58906
Target:  5'- gGGCCGg-GcGGCGuGGGCGGcgGCGCGAc -3'
miRNA:   3'- aCCGGCgaC-CCGCuCUCGCU--UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 121160 0.71 0.58906
Target:  5'- cGGCCGCggcccaGGGCGAGGcguucuCGGACgACGAc -3'
miRNA:   3'- aCCGGCGa-----CCCGCUCUc-----GCUUG-UGCU- -5'
9212 5' -59.5 NC_002512.2 + 121005 0.71 0.58906
Target:  5'- cGGCagaGCgaagcgGGGCGugcugaccucGGGCGAGCGCGAc -3'
miRNA:   3'- aCCGg--CGa-----CCCGCu---------CUCGCUUGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.