Results 81 - 100 of 233 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9212 | 5' | -59.5 | NC_002512.2 | + | 111335 | 0.67 | 0.805264 |
Target: 5'- -uGCCGUUGuuGGCGucccGGGCGcGCACGAg -3' miRNA: 3'- acCGGCGAC--CCGCu---CUCGCuUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 105204 | 0.67 | 0.805264 |
Target: 5'- aGGCCGUguaGaGGUccGAGCuGAGCGCGAa -3' miRNA: 3'- aCCGGCGa--C-CCGcuCUCG-CUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 228966 | 0.67 | 0.805264 |
Target: 5'- gGGgCGgaGGGCGGGAGacgGAGCA-GAg -3' miRNA: 3'- aCCgGCgaCCCGCUCUCg--CUUGUgCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 227531 | 0.67 | 0.805264 |
Target: 5'- cGGCgGCggacgggGGGagGAGGGCGggUccGCGAc -3' miRNA: 3'- aCCGgCGa------CCCg-CUCUCGCuuG--UGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 182079 | 0.67 | 0.805264 |
Target: 5'- -aGCCGCggcuccgGGGUcuGGGCGAACAgGAu -3' miRNA: 3'- acCGGCGa------CCCGcuCUCGCUUGUgCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 227097 | 0.67 | 0.804419 |
Target: 5'- cGGCCGCcggccGGGUcgggcucagacggGGGAGCGggUGCa- -3' miRNA: 3'- aCCGGCGa----CCCG-------------CUCUCGCuuGUGcu -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 103693 | 0.67 | 0.796749 |
Target: 5'- gGGCgGCggacGcGGCGGGAGgGGGCGCc- -3' miRNA: 3'- aCCGgCGa---C-CCGCUCUCgCUUGUGcu -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 202774 | 0.67 | 0.813637 |
Target: 5'- gUGGaaGUUGGGCaccacccGAGCGAGCAUGc -3' miRNA: 3'- -ACCggCGACCCGcu-----CUCGCUUGUGCu -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 155871 | 0.67 | 0.813637 |
Target: 5'- cGGCCacGCUGuucguccccgacGGCGGGcGCGGGgACGAg -3' miRNA: 3'- aCCGG--CGAC------------CCGCUCuCGCUUgUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 219837 | 0.67 | 0.821045 |
Target: 5'- cGGUCGggGGGUccggcccGGGGGCGGAuCGCGGa -3' miRNA: 3'- aCCGGCgaCCCG-------CUCUCGCUU-GUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 160932 | 0.66 | 0.83783 |
Target: 5'- -aGUCGCUGcGGCGGuGGGgGGGuCACGAg -3' miRNA: 3'- acCGGCGAC-CCGCU-CUCgCUU-GUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 150219 | 0.66 | 0.83783 |
Target: 5'- aGGCCGCcGGG-GAG-GCGAu--CGAg -3' miRNA: 3'- aCCGGCGaCCCgCUCuCGCUuguGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 129282 | 0.66 | 0.83783 |
Target: 5'- gGGaCUGggggGGGgGGGAGgGAGCACGGc -3' miRNA: 3'- aCC-GGCga--CCCgCUCUCgCUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 204724 | 0.66 | 0.829926 |
Target: 5'- gGGCC-CgGGGCGGGGGgcCGGACcCGGg -3' miRNA: 3'- aCCGGcGaCCCGCUCUC--GCUUGuGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 158981 | 0.66 | 0.829926 |
Target: 5'- cGGCgGCcacGGCG-GGGCGGAgGCGGc -3' miRNA: 3'- aCCGgCGac-CCGCuCUCGCUUgUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 158564 | 0.66 | 0.829926 |
Target: 5'- gGGCCGCuccUGGcGCGAcAGCGu-CACGu -3' miRNA: 3'- aCCGGCG---ACC-CGCUcUCGCuuGUGCu -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 107005 | 0.66 | 0.829926 |
Target: 5'- gGGCCGggGucGGcCGAGAGCcGGGCGCGc -3' miRNA: 3'- aCCGGCgaC--CC-GCUCUCG-CUUGUGCu -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 103018 | 0.66 | 0.828326 |
Target: 5'- aGGCCGCguaguccaccacGGGCucguagaagaccGGGGGCagGAGCGCGGg -3' miRNA: 3'- aCCGGCGa-----------CCCG------------CUCUCG--CUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 226235 | 0.67 | 0.82186 |
Target: 5'- cGGCCGCgaggGGGCcGGAG-GAGgAgGAg -3' miRNA: 3'- aCCGGCGa---CCCGcUCUCgCUUgUgCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 224151 | 0.67 | 0.796749 |
Target: 5'- aGGCggaCGCgugaggcgGGGCGGGGGC--GCGCGGa -3' miRNA: 3'- aCCG---GCGa-------CCCGCUCUCGcuUGUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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