miRNA display CGI


Results 121 - 140 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 5' -59.5 NC_002512.2 + 227531 0.67 0.805264
Target:  5'- cGGCgGCggacgggGGGagGAGGGCGggUccGCGAc -3'
miRNA:   3'- aCCGgCGa------CCCg-CUCUCGCuuG--UGCU- -5'
9212 5' -59.5 NC_002512.2 + 228966 0.67 0.805264
Target:  5'- gGGgCGgaGGGCGGGAGacgGAGCA-GAg -3'
miRNA:   3'- aCCgGCgaCCCGCUCUCg--CUUGUgCU- -5'
9212 5' -59.5 NC_002512.2 + 105204 0.67 0.805264
Target:  5'- aGGCCGUguaGaGGUccGAGCuGAGCGCGAa -3'
miRNA:   3'- aCCGGCGa--C-CCGcuCUCG-CUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 111335 0.67 0.805264
Target:  5'- -uGCCGUUGuuGGCGucccGGGCGcGCACGAg -3'
miRNA:   3'- acCGGCGAC--CCGCu---CUCGCuUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 126657 0.67 0.805264
Target:  5'- cGGCCGUcgacGGGCGGcGAcGCGAGC-CGc -3'
miRNA:   3'- aCCGGCGa---CCCGCU-CU-CGCUUGuGCu -5'
9212 5' -59.5 NC_002512.2 + 93051 0.67 0.812806
Target:  5'- cGGCUGCUGccccaGGCgcuguaccgggacGAGAGCGAgagccGCGCGu -3'
miRNA:   3'- aCCGGCGAC-----CCG-------------CUCUCGCU-----UGUGCu -5'
9212 5' -59.5 NC_002512.2 + 2078 0.73 0.485416
Target:  5'- cGGaguccaCGCcGGGCGGGAGCGGGCgguACGGc -3'
miRNA:   3'- aCCg-----GCGaCCCGCUCUCGCUUG---UGCU- -5'
9212 5' -59.5 NC_002512.2 + 9470 0.73 0.485416
Target:  5'- cUGGCCGUaggcGGGCGGGcccGCGAGCgGCGGg -3'
miRNA:   3'- -ACCGGCGa---CCCGCUCu--CGCUUG-UGCU- -5'
9212 5' -59.5 NC_002512.2 + 97317 0.73 0.485416
Target:  5'- cUGGCCGCgcccgccgGGGuCGAGGGCGGAgAggcCGAc -3'
miRNA:   3'- -ACCGGCGa-------CCC-GCUCUCGCUUgU---GCU- -5'
9212 5' -59.5 NC_002512.2 + 23337 0.72 0.494518
Target:  5'- gGGCCGCcGGcgguguaCGAGugcGGCGAGCACGAg -3'
miRNA:   3'- aCCGGCGaCCc------GCUC---UCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 60751 0.72 0.503697
Target:  5'- cGGCgGCcGGGCGGacGAG-GAGCGCGAc -3'
miRNA:   3'- aCCGgCGaCCCGCU--CUCgCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 118116 0.72 0.522269
Target:  5'- cGGCCguaucGCUgacgggggaggGGGCGGGGGCGGAacCGCGAc -3'
miRNA:   3'- aCCGG-----CGA-----------CCCGCUCUCGCUU--GUGCU- -5'
9212 5' -59.5 NC_002512.2 + 29896 0.73 0.449848
Target:  5'- gGGCCGCUcguccccgccGGGCGc--GCGGACGCGGc -3'
miRNA:   3'- aCCGGCGA----------CCCGCucuCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 25206 0.74 0.415763
Target:  5'- -cGCCGCgacGGaGCGGGAGCGAGCcgccgGCGAu -3'
miRNA:   3'- acCGGCGa--CC-CGCUCUCGCUUG-----UGCU- -5'
9212 5' -59.5 NC_002512.2 + 109793 0.75 0.37546
Target:  5'- cGGgCGCcaGGGgGAGGGCGAACAgGAu -3'
miRNA:   3'- aCCgGCGa-CCCgCUCUCGCUUGUgCU- -5'
9212 5' -59.5 NC_002512.2 + 97381 0.75 0.360094
Target:  5'- cGGCgGCcGGaGaCGGGGGCGGGCGCGAc -3'
miRNA:   3'- aCCGgCGaCC-C-GCUCUCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 110263 0.79 0.225758
Target:  5'- aGcGCCGCgcugGGGCGGGAgGCGAGCgGCGAg -3'
miRNA:   3'- aC-CGGCGa---CCCGCUCU-CGCUUG-UGCU- -5'
9212 5' -59.5 NC_002512.2 + 11068 0.79 0.210466
Target:  5'- gGGCCGCggaGGGCGAGAcggaGCGGACgGCGGu -3'
miRNA:   3'- aCCGGCGa--CCCGCUCU----CGCUUG-UGCU- -5'
9212 5' -59.5 NC_002512.2 + 24683 0.82 0.146822
Target:  5'- gGGCCGCUcGGGCGGGGGUcucgucgaGGACGCGGg -3'
miRNA:   3'- aCCGGCGA-CCCGCUCUCG--------CUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 106456 0.66 0.867685
Target:  5'- -cGCCuGUcGGGgGAucGCGAACACGAa -3'
miRNA:   3'- acCGG-CGaCCCgCUcuCGCUUGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.