Results 141 - 160 of 233 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9212 | 5' | -59.5 | NC_002512.2 | + | 120782 | 0.7 | 0.657201 |
Target: 5'- cGGCCGUc-GGCGGGGGCGGcgGgACGGc -3' miRNA: 3'- aCCGGCGacCCGCUCUCGCU--UgUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 127903 | 0.69 | 0.666918 |
Target: 5'- aGGUCGCgaccguggGaGGCGAGGGCGGAU-CGGu -3' miRNA: 3'- aCCGGCGa-------C-CCGCUCUCGCUUGuGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 116891 | 0.71 | 0.58906 |
Target: 5'- cUGGCgGCgGGGCcGGGGCGGGCuccuCGGa -3' miRNA: 3'- -ACCGgCGaCCCGcUCUCGCUUGu---GCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 10465 | 0.71 | 0.58906 |
Target: 5'- aGGCCGCcgccgccccGGGCGuGGGCGu-CGCGGc -3' miRNA: 3'- aCCGGCGa--------CCCGCuCUCGCuuGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 50744 | 0.71 | 0.579389 |
Target: 5'- gGaGCUGCUGGGCcucuccGGCGAGCugGAu -3' miRNA: 3'- aC-CGGCGACCCGcuc---UCGCUUGugCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 24683 | 0.82 | 0.146822 |
Target: 5'- gGGCCGCUcGGGCGGGGGUcucgucgaGGACGCGGg -3' miRNA: 3'- aCCGGCGA-CCCGCUCUCG--------CUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 11068 | 0.79 | 0.210466 |
Target: 5'- gGGCCGCggaGGGCGAGAcggaGCGGACgGCGGu -3' miRNA: 3'- aCCGGCGa--CCCGCUCU----CGCUUG-UGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 110263 | 0.79 | 0.225758 |
Target: 5'- aGcGCCGCgcugGGGCGGGAgGCGAGCgGCGAg -3' miRNA: 3'- aC-CGGCGa---CCCGCUCU-CGCUUG-UGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 97381 | 0.75 | 0.360094 |
Target: 5'- cGGCgGCcGGaGaCGGGGGCGGGCGCGAc -3' miRNA: 3'- aCCGgCGaCC-C-GCUCUCGCUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 109793 | 0.75 | 0.37546 |
Target: 5'- cGGgCGCcaGGGgGAGGGCGAACAgGAu -3' miRNA: 3'- aCCgGCGa-CCCgCUCUCGCUUGUgCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 25206 | 0.74 | 0.415763 |
Target: 5'- -cGCCGCgacGGaGCGGGAGCGAGCcgccgGCGAu -3' miRNA: 3'- acCGGCGa--CC-CGCUCUCGCUUG-----UGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 29896 | 0.73 | 0.449848 |
Target: 5'- gGGCCGCUcguccccgccGGGCGc--GCGGACGCGGc -3' miRNA: 3'- aCCGGCGA----------CCCGCucuCGCUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 2078 | 0.73 | 0.485416 |
Target: 5'- cGGaguccaCGCcGGGCGGGAGCGGGCgguACGGc -3' miRNA: 3'- aCCg-----GCGaCCCGCUCUCGCUUG---UGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 9470 | 0.73 | 0.485416 |
Target: 5'- cUGGCCGUaggcGGGCGGGcccGCGAGCgGCGGg -3' miRNA: 3'- -ACCGGCGa---CCCGCUCu--CGCUUG-UGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 97317 | 0.73 | 0.485416 |
Target: 5'- cUGGCCGCgcccgccgGGGuCGAGGGCGGAgAggcCGAc -3' miRNA: 3'- -ACCGGCGa-------CCC-GCUCUCGCUUgU---GCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 23337 | 0.72 | 0.494518 |
Target: 5'- gGGCCGCcGGcgguguaCGAGugcGGCGAGCACGAg -3' miRNA: 3'- aCCGGCGaCCc------GCUC---UCGCUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 60751 | 0.72 | 0.503697 |
Target: 5'- cGGCgGCcGGGCGGacGAG-GAGCGCGAc -3' miRNA: 3'- aCCGgCGaCCCGCU--CUCgCUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 118116 | 0.72 | 0.522269 |
Target: 5'- cGGCCguaucGCUgacgggggaggGGGCGGGGGCGGAacCGCGAc -3' miRNA: 3'- aCCGG-----CGA-----------CCCGCUCUCGCUU--GUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 4426 | 0.71 | 0.54965 |
Target: 5'- cGGCUGCUGguagaccGGCGGGGuGCcGGGCGCGGg -3' miRNA: 3'- aCCGGCGAC-------CCGCUCU-CG-CUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 21250 | 0.71 | 0.569752 |
Target: 5'- gGGCggagaggGCUGGaGCGGGAGCGGgggacgacaGCACGGa -3' miRNA: 3'- aCCGg------CGACC-CGCUCUCGCU---------UGUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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