miRNA display CGI


Results 41 - 60 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 5' -59.5 NC_002512.2 + 36676 0.68 0.724419
Target:  5'- aGGCUGCcGGGCaacGGCGAGC-CGAa -3'
miRNA:   3'- aCCGGCGaCCCGcucUCGCUUGuGCU- -5'
9212 5' -59.5 NC_002512.2 + 38434 0.7 0.637719
Target:  5'- cGGCCcaccucaacGCcccGGGCG-GAGUGAACAUGAc -3'
miRNA:   3'- aCCGG---------CGa--CCCGCuCUCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 41666 0.66 0.867685
Target:  5'- cGGUCGagagacCUGGGCGAGgaaAGCGAGaaucagGCGGg -3'
miRNA:   3'- aCCGGC------GACCCGCUC---UCGCUUg-----UGCU- -5'
9212 5' -59.5 NC_002512.2 + 45264 0.67 0.805264
Target:  5'- cGGCCGCc-GGCGGG-GCGcuCGCGc -3'
miRNA:   3'- aCCGGCGacCCGCUCuCGCuuGUGCu -5'
9212 5' -59.5 NC_002512.2 + 47025 0.7 0.627968
Target:  5'- gGaGCUGCUGGGCGAgcuGAG-GAaGCACGGg -3'
miRNA:   3'- aC-CGGCGACCCGCU---CUCgCU-UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 47374 0.66 0.867685
Target:  5'- cGGaCGCUGcGGCGcgcggaggacacGGAGCuGGACGCGc -3'
miRNA:   3'- aCCgGCGAC-CCGC------------UCUCG-CUUGUGCu -5'
9212 5' -59.5 NC_002512.2 + 48093 0.66 0.865548
Target:  5'- aGGUCGCUgcugacgggcaaccGGGCGcuGGAGgacguguggaCGAACGCGGc -3'
miRNA:   3'- aCCGGCGA--------------CCCGC--UCUC----------GCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 48217 0.67 0.805264
Target:  5'- cGGCCGCgGGGCGcGAcuaccuGUaccgGGACGCGGc -3'
miRNA:   3'- aCCGGCGaCCCGCuCU------CG----CUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 50744 0.71 0.579389
Target:  5'- gGaGCUGCUGGGCcucuccGGCGAGCugGAu -3'
miRNA:   3'- aC-CGGCGACCCGcuc---UCGCUUGugCU- -5'
9212 5' -59.5 NC_002512.2 + 51713 0.66 0.845563
Target:  5'- aUGGCCG-UGGaCGAGA-CGAACGuCGAa -3'
miRNA:   3'- -ACCGGCgACCcGCUCUcGCUUGU-GCU- -5'
9212 5' -59.5 NC_002512.2 + 53230 0.67 0.779322
Target:  5'- aGGCgCGCU-GGCGGGAGCuGGugAUGc -3'
miRNA:   3'- aCCG-GCGAcCCGCUCUCG-CUugUGCu -5'
9212 5' -59.5 NC_002512.2 + 54424 0.68 0.743094
Target:  5'- cGGCCuGCUGGGgGAagaggacaGGGgGAccgGCACGGu -3'
miRNA:   3'- aCCGG-CGACCCgCU--------CUCgCU---UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 57041 0.69 0.680478
Target:  5'- aGGCCGCguccgacgaccgggGGGCGccGGGCGAACGg-- -3'
miRNA:   3'- aCCGGCGa-------------CCCGCu-CUCGCUUGUgcu -5'
9212 5' -59.5 NC_002512.2 + 57890 0.66 0.848607
Target:  5'- cGGCgGCgacGGCGAcGGCGAucagcaggacuaagaGCGCGAg -3'
miRNA:   3'- aCCGgCGac-CCGCUcUCGCU---------------UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 60751 0.72 0.503697
Target:  5'- cGGCgGCcGGGCGGacGAG-GAGCGCGAc -3'
miRNA:   3'- aCCGgCGaCCCGCU--CUCgCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 67496 0.66 0.867685
Target:  5'- cGGUCgGCgucuugGGGCuGGGAGCgGGACACu- -3'
miRNA:   3'- aCCGG-CGa-----CCCG-CUCUCG-CUUGUGcu -5'
9212 5' -59.5 NC_002512.2 + 74552 0.7 0.61822
Target:  5'- cGGCCGC-GGcGaCGGGAGCGAGguugGCGAg -3'
miRNA:   3'- aCCGGCGaCC-C-GCUCUCGCUUg---UGCU- -5'
9212 5' -59.5 NC_002512.2 + 74647 0.74 0.43261
Target:  5'- -cGCCGCgacGGGCGGGAcggccGCGGGCGCGu -3'
miRNA:   3'- acCGGCGa--CCCGCUCU-----CGCUUGUGCu -5'
9212 5' -59.5 NC_002512.2 + 78396 0.67 0.796749
Target:  5'- aGGCCgGCUGGagauCGAGAGCGcGGgAUGAc -3'
miRNA:   3'- aCCGG-CGACCc---GCUCUCGC-UUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 80682 0.71 0.58906
Target:  5'- cGGCgGCgacggGGGCGAGcggcguccggggGGCGAgggcGCGCGGg -3'
miRNA:   3'- aCCGgCGa----CCCGCUC------------UCGCU----UGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.