miRNA display CGI


Results 41 - 60 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 5' -59.5 NC_002512.2 + 25206 0.74 0.415763
Target:  5'- -cGCCGCgacGGaGCGGGAGCGAGCcgccgGCGAu -3'
miRNA:   3'- acCGGCGa--CC-CGCUCUCGCUUG-----UGCU- -5'
9212 5' -59.5 NC_002512.2 + 170406 0.69 0.695887
Target:  5'- aGGCCGCUcgagacccgcuGGCGAGGGCcucGGAUACGu -3'
miRNA:   3'- aCCGGCGAc----------CCGCUCUCG---CUUGUGCu -5'
9212 5' -59.5 NC_002512.2 + 27977 0.68 0.752303
Target:  5'- gGGCgGCcGGGCGAGAuucCG-GCGCGGg -3'
miRNA:   3'- aCCGgCGaCCCGCUCUc--GCuUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 6321 0.68 0.743094
Target:  5'- gUGGCCGCcGcccGCGGGGGgacCGGGCGCGGg -3'
miRNA:   3'- -ACCGGCGaCc--CGCUCUC---GCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 152805 0.69 0.686269
Target:  5'- aGGuCCGCggcgacGGCGGGcGGCGAGCAgGAu -3'
miRNA:   3'- aCC-GGCGac----CCGCUC-UCGCUUGUgCU- -5'
9212 5' -59.5 NC_002512.2 + 21250 0.71 0.569752
Target:  5'- gGGCggagaggGCUGGaGCGGGAGCGGgggacgacaGCACGGa -3'
miRNA:   3'- aCCGg------CGACC-CGCUCUCGCU---------UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 109793 0.75 0.37546
Target:  5'- cGGgCGCcaGGGgGAGGGCGAACAgGAu -3'
miRNA:   3'- aCCgGCGa-CCCgCUCUCGCUUGUgCU- -5'
9212 5' -59.5 NC_002512.2 + 97381 0.75 0.360094
Target:  5'- cGGCgGCcGGaGaCGGGGGCGGGCGCGAc -3'
miRNA:   3'- aCCGgCGaCC-C-GCUCUCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 81985 0.71 0.59876
Target:  5'- gUGGCgGCggGGGCGucucgGGGGCGGuCGCGGc -3'
miRNA:   3'- -ACCGgCGa-CCCGC-----UCUCGCUuGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 130852 0.7 0.647465
Target:  5'- cGGCgGUcGGGCGAGGcccccacCGGGCGCGAg -3'
miRNA:   3'- aCCGgCGaCCCGCUCUc------GCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 38434 0.7 0.637719
Target:  5'- cGGCCcaccucaacGCcccGGGCG-GAGUGAACAUGAc -3'
miRNA:   3'- aCCGG---------CGa--CCCGCuCUCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 154791 0.71 0.58906
Target:  5'- cUGGCuCGgaGGgaGCGGGAGUGAGCgACGGa -3'
miRNA:   3'- -ACCG-GCgaCC--CGCUCUCGCUUG-UGCU- -5'
9212 5' -59.5 NC_002512.2 + 9470 0.73 0.485416
Target:  5'- cUGGCCGUaggcGGGCGGGcccGCGAGCgGCGGg -3'
miRNA:   3'- -ACCGGCGa---CCCGCUCu--CGCUUG-UGCU- -5'
9212 5' -59.5 NC_002512.2 + 36676 0.68 0.724419
Target:  5'- aGGCUGCcGGGCaacGGCGAGC-CGAa -3'
miRNA:   3'- aCCGGCGaCCCGcucUCGCUUGuGCU- -5'
9212 5' -59.5 NC_002512.2 + 135357 0.68 0.721592
Target:  5'- cUGGCCGUcgaccgcuucguccUGGGCGGGuuCGAAgACGc -3'
miRNA:   3'- -ACCGGCG--------------ACCCGCUCucGCUUgUGCu -5'
9212 5' -59.5 NC_002512.2 + 123552 0.69 0.67661
Target:  5'- cGGgCGCggacgucgaGGGgGAGAGCGAcggGCugGAc -3'
miRNA:   3'- aCCgGCGa--------CCCgCUCUCGCU---UGugCU- -5'
9212 5' -59.5 NC_002512.2 + 82333 0.68 0.737526
Target:  5'- gGGCCGCcccggcggguagcggUGGGCGu--GCGGGgGCGGc -3'
miRNA:   3'- aCCGGCG---------------ACCCGCucuCGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 106456 0.66 0.867685
Target:  5'- -cGCCuGUcGGGgGAucGCGAACACGAa -3'
miRNA:   3'- acCGG-CGaCCCgCUcuCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 13692 0.68 0.770425
Target:  5'- cGGCCGCgGcGGUGAucaCGGGCGCGAu -3'
miRNA:   3'- aCCGGCGaC-CCGCUcucGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 229473 0.68 0.724419
Target:  5'- cGGUCGCgGGcGCGAGgaGGCGAGagGCGGc -3'
miRNA:   3'- aCCGGCGaCC-CGCUC--UCGCUUg-UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.