miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9214 3' -56.4 NC_002512.2 + 97619 0.66 0.941889
Target:  5'- uGUGcGCCGCCaUGUACCcGAUCauCACg -3'
miRNA:   3'- -CAC-CGGUGGgACAUGGaCUAGguGUG- -5'
9214 3' -56.4 NC_002512.2 + 99953 0.66 0.941889
Target:  5'- --uGCCGCCg-GUGCCUGAUCgGCc- -3'
miRNA:   3'- cacCGGUGGgaCAUGGACUAGgUGug -5'
9214 3' -56.4 NC_002512.2 + 49233 0.66 0.941889
Target:  5'- -gGGCCACCgCggcgGCCUG--CCGCACc -3'
miRNA:   3'- caCCGGUGG-Gaca-UGGACuaGGUGUG- -5'
9214 3' -56.4 NC_002512.2 + 221775 0.66 0.941889
Target:  5'- -cGGCCGucgugUCCUGgcGCCUGcUCUACGCc -3'
miRNA:   3'- caCCGGU-----GGGACa-UGGACuAGGUGUG- -5'
9214 3' -56.4 NC_002512.2 + 213230 0.66 0.932396
Target:  5'- cGUGGCCGCCaacgGcGCCggccgGAUCUGCGu -3'
miRNA:   3'- -CACCGGUGGga--CaUGGa----CUAGGUGUg -5'
9214 3' -56.4 NC_002512.2 + 140468 0.66 0.932396
Target:  5'- --cGCCgacGCCCgagGCCUGGUuCCGCGCg -3'
miRNA:   3'- cacCGG---UGGGacaUGGACUA-GGUGUG- -5'
9214 3' -56.4 NC_002512.2 + 37093 0.66 0.927305
Target:  5'- -gGGUgGCgUUGUGCCcGcgCCGCACg -3'
miRNA:   3'- caCCGgUGgGACAUGGaCuaGGUGUG- -5'
9214 3' -56.4 NC_002512.2 + 108066 0.66 0.927305
Target:  5'- -aGGUCACCCgccccGUGCgUGcuGUCCACcACg -3'
miRNA:   3'- caCCGGUGGGa----CAUGgAC--UAGGUG-UG- -5'
9214 3' -56.4 NC_002512.2 + 119033 0.66 0.927305
Target:  5'- -gGGCCGgCCgucGUggGCCUGuucgCCGCGCa -3'
miRNA:   3'- caCCGGUgGGa--CA--UGGACua--GGUGUG- -5'
9214 3' -56.4 NC_002512.2 + 21330 0.66 0.921983
Target:  5'- -cGGCCugacgcaccGCCCUG---CUGAUCCGCAg -3'
miRNA:   3'- caCCGG---------UGGGACaugGACUAGGUGUg -5'
9214 3' -56.4 NC_002512.2 + 155495 0.66 0.921983
Target:  5'- aUGGCCGCcgcucuCCUGgaagACCUGGUCgACc- -3'
miRNA:   3'- cACCGGUG------GGACa---UGGACUAGgUGug -5'
9214 3' -56.4 NC_002512.2 + 135146 0.66 0.920341
Target:  5'- -gGGCCGCCCUGgugaUgcuggccagcgaacGCCUGcgccCCGCGCa -3'
miRNA:   3'- caCCGGUGGGAC----A--------------UGGACua--GGUGUG- -5'
9214 3' -56.4 NC_002512.2 + 104255 0.67 0.91643
Target:  5'- aUGGCCAaccgggugaCCgaaUACCUGAcCCACGCc -3'
miRNA:   3'- cACCGGUg--------GGac-AUGGACUaGGUGUG- -5'
9214 3' -56.4 NC_002512.2 + 206070 0.67 0.91643
Target:  5'- gGUGGCCACCUggGUGCCgcgGugcagCUGCAg -3'
miRNA:   3'- -CACCGGUGGGa-CAUGGa--Cua---GGUGUg -5'
9214 3' -56.4 NC_002512.2 + 93816 0.67 0.91643
Target:  5'- -cGGCCcCCCg--GCCgGAcCCACGCa -3'
miRNA:   3'- caCCGGuGGGacaUGGaCUaGGUGUG- -5'
9214 3' -56.4 NC_002512.2 + 61458 0.67 0.91643
Target:  5'- gGUGGCCcgggaCCUGUACCgGGUgagcaucgacaUCGCGCa -3'
miRNA:   3'- -CACCGGug---GGACAUGGaCUA-----------GGUGUG- -5'
9214 3' -56.4 NC_002512.2 + 34284 0.67 0.91643
Target:  5'- gGUGGCCGCCCcgccgagGUGacuggcguuccCCUcGGUCCACu- -3'
miRNA:   3'- -CACCGGUGGGa------CAU-----------GGA-CUAGGUGug -5'
9214 3' -56.4 NC_002512.2 + 9986 0.67 0.910649
Target:  5'- gGUaGCCAUCCUGUA-CUGAUgCugACg -3'
miRNA:   3'- -CAcCGGUGGGACAUgGACUAgGugUG- -5'
9214 3' -56.4 NC_002512.2 + 127228 0.67 0.910649
Target:  5'- -cGGCCGCCCUcucCCcGGUCUACGa -3'
miRNA:   3'- caCCGGUGGGAcauGGaCUAGGUGUg -5'
9214 3' -56.4 NC_002512.2 + 126460 0.67 0.904639
Target:  5'- -cGGCCGCCUUGUucGCCgucGUCguCGCg -3'
miRNA:   3'- caCCGGUGGGACA--UGGac-UAGguGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.