miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9215 3' -60.8 NC_002512.2 + 80936 0.66 0.823604
Target:  5'- cUCCCGGCgguagGUGCCGUC-CCggGUCu -3'
miRNA:   3'- uGGGGCUGaa---CACGGCGGcGGa-CAGc -5'
9215 3' -60.8 NC_002512.2 + 212069 0.66 0.815516
Target:  5'- cACCCUGGgcau--CCGCCGCCUGUaCGa -3'
miRNA:   3'- -UGGGGCUgaacacGGCGGCGGACA-GC- -5'
9215 3' -60.8 NC_002512.2 + 223480 0.66 0.815516
Target:  5'- uCCCCaGCgcc-GCCGCCGCCUcccugcccGUCGc -3'
miRNA:   3'- uGGGGcUGaacaCGGCGGCGGA--------CAGC- -5'
9215 3' -60.8 NC_002512.2 + 135228 0.66 0.815516
Target:  5'- cCCCCGGCcccggGCCGCCucgagGCC-GUCGu -3'
miRNA:   3'- uGGGGCUGaaca-CGGCGG-----CGGaCAGC- -5'
9215 3' -60.8 NC_002512.2 + 2606 0.66 0.814699
Target:  5'- cCCCCucCUgGUGCuguucucCGCCGuCCUGUCGc -3'
miRNA:   3'- uGGGGcuGAaCACG-------GCGGC-GGACAGC- -5'
9215 3' -60.8 NC_002512.2 + 224036 0.66 0.807281
Target:  5'- gACUCCGACggG-GCCGCCGgggacgaCUcGUCGg -3'
miRNA:   3'- -UGGGGCUGaaCaCGGCGGCg------GA-CAGC- -5'
9215 3' -60.8 NC_002512.2 + 70228 0.66 0.807281
Target:  5'- uACaCCGGCUcgGUGCCGgCGCUcGUCu -3'
miRNA:   3'- -UGgGGCUGAa-CACGGCgGCGGaCAGc -5'
9215 3' -60.8 NC_002512.2 + 6361 0.66 0.807281
Target:  5'- gGCCgCgGGCgcGUGCCGuucuCCGCCgugGUCGu -3'
miRNA:   3'- -UGG-GgCUGaaCACGGC----GGCGGa--CAGC- -5'
9215 3' -60.8 NC_002512.2 + 137970 0.66 0.798905
Target:  5'- gGCCgCCGACggcGcGCCGCCGCCc---- -3'
miRNA:   3'- -UGG-GGCUGaa-CaCGGCGGCGGacagc -5'
9215 3' -60.8 NC_002512.2 + 137870 0.66 0.798905
Target:  5'- cCCCCGACgcccgcgaGU-CCGCCGCCgg-CGa -3'
miRNA:   3'- uGGGGCUGaa------CAcGGCGGCGGacaGC- -5'
9215 3' -60.8 NC_002512.2 + 132511 0.66 0.798905
Target:  5'- cCCCCGuCUccgGCCGCCGCg-GUCc -3'
miRNA:   3'- uGGGGCuGAacaCGGCGGCGgaCAGc -5'
9215 3' -60.8 NC_002512.2 + 74523 0.66 0.798905
Target:  5'- cGCCCCGACcucgaGcGCCGCucguguuacgCGUCUGUCu -3'
miRNA:   3'- -UGGGGCUGaa---CaCGGCG----------GCGGACAGc -5'
9215 3' -60.8 NC_002512.2 + 101406 0.66 0.790395
Target:  5'- uCCgCCGACcgcUGUcGCUGCCG-CUGUCGc -3'
miRNA:   3'- uGG-GGCUGa--ACA-CGGCGGCgGACAGC- -5'
9215 3' -60.8 NC_002512.2 + 65246 0.66 0.790395
Target:  5'- cACCCCGAUc---GCCGCCuGCC-GUCc -3'
miRNA:   3'- -UGGGGCUGaacaCGGCGG-CGGaCAGc -5'
9215 3' -60.8 NC_002512.2 + 76485 0.66 0.781759
Target:  5'- cACCUCGACc---GCCGCCGCgCUccacGUCGc -3'
miRNA:   3'- -UGGGGCUGaacaCGGCGGCG-GA----CAGC- -5'
9215 3' -60.8 NC_002512.2 + 205595 0.66 0.781759
Target:  5'- cGCCCCGccGCUgucccgcggGaUGCCGUCGCCgccGUCc -3'
miRNA:   3'- -UGGGGC--UGAa--------C-ACGGCGGCGGa--CAGc -5'
9215 3' -60.8 NC_002512.2 + 222170 0.67 0.773885
Target:  5'- uAUCCCGACgccuacucccggGCCGCgGCCggcGUCGu -3'
miRNA:   3'- -UGGGGCUGaaca--------CGGCGgCGGa--CAGC- -5'
9215 3' -60.8 NC_002512.2 + 75564 0.67 0.773004
Target:  5'- cGCCggGGCggG-GCCGCCGCCgucgcgGUCGa -3'
miRNA:   3'- -UGGggCUGaaCaCGGCGGCGGa-----CAGC- -5'
9215 3' -60.8 NC_002512.2 + 47814 0.67 0.773004
Target:  5'- gACCCCGGa----GCCGCgGCUgagGUCGg -3'
miRNA:   3'- -UGGGGCUgaacaCGGCGgCGGa--CAGC- -5'
9215 3' -60.8 NC_002512.2 + 183952 0.67 0.773004
Target:  5'- uGCuCCCGggacgcgcGCUcggGcGUCGUCGCCUGUCGg -3'
miRNA:   3'- -UG-GGGC--------UGAa--CaCGGCGGCGGACAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.