miRNA display CGI


Results 1 - 20 of 121 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9215 5' -59.2 NC_002512.2 + 105 0.66 0.873171
Target:  5'- -gCGGguGGGCGGaGGCGgCGGAGa- -3'
miRNA:   3'- aaGCUguCCUGCCaCUGCgGCCUCga -5'
9215 5' -59.2 NC_002512.2 + 138554 0.66 0.873171
Target:  5'- -cUGGCAGGAgCGGagcGcCGCCGuGAGCUc -3'
miRNA:   3'- aaGCUGUCCU-GCCa--CuGCGGC-CUCGA- -5'
9215 5' -59.2 NC_002512.2 + 45919 0.66 0.873171
Target:  5'- -cCGACAGG-CGacGACGCCcGAGCg -3'
miRNA:   3'- aaGCUGUCCuGCcaCUGCGGcCUCGa -5'
9215 5' -59.2 NC_002512.2 + 18711 0.66 0.873171
Target:  5'- -cCGAgCAGGGCGGcGACGCgcuCGG-GCa -3'
miRNA:   3'- aaGCU-GUCCUGCCaCUGCG---GCCuCGa -5'
9215 5' -59.2 NC_002512.2 + 87692 0.66 0.873171
Target:  5'- -cCGACGGGacgcgcggcgacGCGGaGACGCCGcGAGaCg -3'
miRNA:   3'- aaGCUGUCC------------UGCCaCUGCGGC-CUC-Ga -5'
9215 5' -59.2 NC_002512.2 + 229509 0.66 0.873171
Target:  5'- -gCGGguGGGCGGaGGCGgCGGAGa- -3'
miRNA:   3'- aaGCUguCCUGCCaCUGCgGCCUCga -5'
9215 5' -59.2 NC_002512.2 + 126471 0.66 0.872473
Target:  5'- gUUCGACGGcgucuucGACGaguucGUGGCcCCGGAGCg -3'
miRNA:   3'- -AAGCUGUC-------CUGC-----CACUGcGGCCUCGa -5'
9215 5' -59.2 NC_002512.2 + 149264 0.66 0.866098
Target:  5'- -aCGGCcGGACGGguacGACGa-GGAGCg -3'
miRNA:   3'- aaGCUGuCCUGCCa---CUGCggCCUCGa -5'
9215 5' -59.2 NC_002512.2 + 77323 0.66 0.866098
Target:  5'- -gCGACGGGGucuCGGgcuccUGAC-CCGGGGCg -3'
miRNA:   3'- aaGCUGUCCU---GCC-----ACUGcGGCCUCGa -5'
9215 5' -59.2 NC_002512.2 + 44422 0.66 0.866098
Target:  5'- -gCGGCAGGACcacGGCGaaGGAGCa -3'
miRNA:   3'- aaGCUGUCCUGccaCUGCggCCUCGa -5'
9215 5' -59.2 NC_002512.2 + 209019 0.66 0.866098
Target:  5'- gUCGccgccaugaGCGGGGCGGccGCGucCCGGAGCg -3'
miRNA:   3'- aAGC---------UGUCCUGCCacUGC--GGCCUCGa -5'
9215 5' -59.2 NC_002512.2 + 223272 0.66 0.858831
Target:  5'- gUCGG-GGGGCGG-GACGCCGcGcgcAGCUa -3'
miRNA:   3'- aAGCUgUCCUGCCaCUGCGGC-C---UCGA- -5'
9215 5' -59.2 NC_002512.2 + 91958 0.66 0.858831
Target:  5'- aUCGcCAGGGCGGagcgGcACGuCCGGAGg- -3'
miRNA:   3'- aAGCuGUCCUGCCa---C-UGC-GGCCUCga -5'
9215 5' -59.2 NC_002512.2 + 79163 0.66 0.858094
Target:  5'- -cCGACGGGAaguccaaCGGUcGGcCGCCGaGAGCc -3'
miRNA:   3'- aaGCUGUCCU-------GCCA-CU-GCGGC-CUCGa -5'
9215 5' -59.2 NC_002512.2 + 136192 0.66 0.851377
Target:  5'- gUCGcCGGGAuCGcGUcGACGCCGGcGGCc -3'
miRNA:   3'- aAGCuGUCCU-GC-CA-CUGCGGCC-UCGa -5'
9215 5' -59.2 NC_002512.2 + 78651 0.66 0.851377
Target:  5'- -aUGAUGGcGuCGGUcgagccGGCGCCGGGGCUc -3'
miRNA:   3'- aaGCUGUC-CuGCCA------CUGCGGCCUCGA- -5'
9215 5' -59.2 NC_002512.2 + 131050 0.66 0.851377
Target:  5'- --gGGgAGGACGGcGccGCGCCGGAGg- -3'
miRNA:   3'- aagCUgUCCUGCCaC--UGCGGCCUCga -5'
9215 5' -59.2 NC_002512.2 + 93180 0.66 0.851377
Target:  5'- -cCGACAGGAUGGcgGACGa--GAGCg -3'
miRNA:   3'- aaGCUGUCCUGCCa-CUGCggcCUCGa -5'
9215 5' -59.2 NC_002512.2 + 144033 0.66 0.851377
Target:  5'- cUCGACAGaaGGCGGUcuAgGCgGGAGCg -3'
miRNA:   3'- aAGCUGUC--CUGCCAc-UgCGgCCUCGa -5'
9215 5' -59.2 NC_002512.2 + 82222 0.66 0.851377
Target:  5'- --gGGCGGGAagcggggcCGGUGACgguaGCgGGAGCg -3'
miRNA:   3'- aagCUGUCCU--------GCCACUG----CGgCCUCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.