miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9218 3' -56.4 NC_002512.2 + 137740 0.65 0.951839
Target:  5'- gGACGAGCguccgagacGACGAagaugucggaacgaGGCGaGUGuCAGCGu -3'
miRNA:   3'- -CUGCUCGa--------CUGCU--------------UCGC-CAC-GUCGCu -5'
9218 3' -56.4 NC_002512.2 + 10495 0.66 0.949012
Target:  5'- cGGCGGGCcGACc-AGCGGagGCAGCc- -3'
miRNA:   3'- -CUGCUCGaCUGcuUCGCCa-CGUCGcu -5'
9218 3' -56.4 NC_002512.2 + 105162 0.66 0.949012
Target:  5'- -cCGAGUcGGCGggGaacaGGUGCAcGCGc -3'
miRNA:   3'- cuGCUCGaCUGCuuCg---CCACGU-CGCu -5'
9218 3' -56.4 NC_002512.2 + 68441 0.66 0.944784
Target:  5'- aGGCGuaggccauGUUGACGuuguagggGAGCGG-GUAGCGAu -3'
miRNA:   3'- -CUGCu-------CGACUGC--------UUCGCCaCGUCGCU- -5'
9218 3' -56.4 NC_002512.2 + 23977 0.66 0.944784
Target:  5'- cGACGAGCUGugaacgggucccGCG-AGCGGggacccGCGacGCGAa -3'
miRNA:   3'- -CUGCUCGAC------------UGCuUCGCCa-----CGU--CGCU- -5'
9218 3' -56.4 NC_002512.2 + 172136 0.66 0.940334
Target:  5'- cGACGAGgaGcGCGA--CGG-GCAGCGGg -3'
miRNA:   3'- -CUGCUCgaC-UGCUucGCCaCGUCGCU- -5'
9218 3' -56.4 NC_002512.2 + 85543 0.66 0.940334
Target:  5'- uGACGGcGCUGGCGggGCucgaGGagGC-GCGGg -3'
miRNA:   3'- -CUGCU-CGACUGCuuCG----CCa-CGuCGCU- -5'
9218 3' -56.4 NC_002512.2 + 226657 0.66 0.940334
Target:  5'- gGACGGGacgGACGGAaacuaauCGGUGaCGGCGAc -3'
miRNA:   3'- -CUGCUCga-CUGCUUc------GCCAC-GUCGCU- -5'
9218 3' -56.4 NC_002512.2 + 119761 0.66 0.940334
Target:  5'- uACGAGCgacGCGucGCGGUcGaCGGCGGg -3'
miRNA:   3'- cUGCUCGac-UGCuuCGCCA-C-GUCGCU- -5'
9218 3' -56.4 NC_002512.2 + 26670 0.66 0.939877
Target:  5'- gGGCGGGCU--CGAAGCGGcagacguacgccgUGCuGGCGGu -3'
miRNA:   3'- -CUGCUCGAcuGCUUCGCC-------------ACG-UCGCU- -5'
9218 3' -56.4 NC_002512.2 + 124312 0.66 0.935659
Target:  5'- --gGAGCUGAuCGggGCc--GCGGCGGa -3'
miRNA:   3'- cugCUCGACU-GCuuCGccaCGUCGCU- -5'
9218 3' -56.4 NC_002512.2 + 131415 0.66 0.935659
Target:  5'- --aGAGCUG-CGAcaCGGUGaCGGCGGg -3'
miRNA:   3'- cugCUCGACuGCUucGCCAC-GUCGCU- -5'
9218 3' -56.4 NC_002512.2 + 4582 0.66 0.935658
Target:  5'- gGGCG-GCgGAgGAGGCGGcGCcGCGGg -3'
miRNA:   3'- -CUGCuCGaCUgCUUCGCCaCGuCGCU- -5'
9218 3' -56.4 NC_002512.2 + 31801 0.66 0.935658
Target:  5'- cGACGGGgaGACGccGgGGcGCGGuCGAg -3'
miRNA:   3'- -CUGCUCgaCUGCuuCgCCaCGUC-GCU- -5'
9218 3' -56.4 NC_002512.2 + 96535 0.66 0.935658
Target:  5'- -cCGAGUUcAgGAAGCGGaucggGCGGCGGg -3'
miRNA:   3'- cuGCUCGAcUgCUUCGCCa----CGUCGCU- -5'
9218 3' -56.4 NC_002512.2 + 95972 0.66 0.935658
Target:  5'- -cCGGGUUGGCGcAGCGGcgGuCGGCGu -3'
miRNA:   3'- cuGCUCGACUGCuUCGCCa-C-GUCGCu -5'
9218 3' -56.4 NC_002512.2 + 87327 0.66 0.935658
Target:  5'- cGAUGAGgUGGacCGAuccGCGGUGC-GCGGu -3'
miRNA:   3'- -CUGCUCgACU--GCUu--CGCCACGuCGCU- -5'
9218 3' -56.4 NC_002512.2 + 28045 0.66 0.931257
Target:  5'- aGGCGAGCUGcCGGccGCGGaaggagcccccgggcGCGGCGGa -3'
miRNA:   3'- -CUGCUCGACuGCUu-CGCCa--------------CGUCGCU- -5'
9218 3' -56.4 NC_002512.2 + 114203 0.66 0.930756
Target:  5'- cGGCG-GCcaUGAgGAGGCGGaagaugGCGGUGAu -3'
miRNA:   3'- -CUGCuCG--ACUgCUUCGCCa-----CGUCGCU- -5'
9218 3' -56.4 NC_002512.2 + 101037 0.66 0.930756
Target:  5'- --aGGGCccgcgcGGCGcccGAGCGGUGCAGCu- -3'
miRNA:   3'- cugCUCGa-----CUGC---UUCGCCACGUCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.