miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9218 5' -52.2 NC_002512.2 + 120770 0.66 0.995737
Target:  5'- uGCUgGACU-CGGCggCCGUCGGc--- -3'
miRNA:   3'- -CGAgUUGAcGCCGuaGGCAGUCaagu -5'
9218 5' -52.2 NC_002512.2 + 80649 0.66 0.995737
Target:  5'- --gCGGCgGCGGCgccggGUCCGUCGGUc-- -3'
miRNA:   3'- cgaGUUGaCGCCG-----UAGGCAGUCAagu -5'
9218 5' -52.2 NC_002512.2 + 181435 0.66 0.995046
Target:  5'- -gUCAGCUGCGGgAUCaccgucgucuuCGUCAGgauccggUCGa -3'
miRNA:   3'- cgAGUUGACGCCgUAG-----------GCAGUCa------AGU- -5'
9218 5' -52.2 NC_002512.2 + 100281 0.66 0.994268
Target:  5'- aGCUCGGCgaGCGGggcgaGUUCGUCGGgggCGa -3'
miRNA:   3'- -CGAGUUGa-CGCCg----UAGGCAGUCaa-GU- -5'
9218 5' -52.2 NC_002512.2 + 180579 0.66 0.994268
Target:  5'- gGCUCucuaucagGGCcGUGGCGUCCGUCAc---- -3'
miRNA:   3'- -CGAG--------UUGaCGCCGUAGGCAGUcaagu -5'
9218 5' -52.2 NC_002512.2 + 170968 0.66 0.993394
Target:  5'- -aUCGACUcGCGGCucaauuuuaucUCCGUCGG-UCGg -3'
miRNA:   3'- cgAGUUGA-CGCCGu----------AGGCAGUCaAGU- -5'
9218 5' -52.2 NC_002512.2 + 148795 0.67 0.991327
Target:  5'- aCUCGuaccGCUGCGGCA-CCGUCucggAGcUCGu -3'
miRNA:   3'- cGAGU----UGACGCCGUaGGCAG----UCaAGU- -5'
9218 5' -52.2 NC_002512.2 + 17982 0.67 0.991327
Target:  5'- cGCUCGACgacGCGGCAgccCCGgaaGGUg-- -3'
miRNA:   3'- -CGAGUUGa--CGCCGUa--GGCag-UCAagu -5'
9218 5' -52.2 NC_002512.2 + 162170 0.67 0.991327
Target:  5'- cGCgaaAGCgGCcGCGUCCGUCGG-UCAc -3'
miRNA:   3'- -CGag-UUGaCGcCGUAGGCAGUCaAGU- -5'
9218 5' -52.2 NC_002512.2 + 169859 0.67 0.991212
Target:  5'- gGCUCGaucuccgACUGCcGCGUCCG-CAGcUUCu -3'
miRNA:   3'- -CGAGU-------UGACGcCGUAGGCaGUC-AAGu -5'
9218 5' -52.2 NC_002512.2 + 45419 0.67 0.985687
Target:  5'- cGCUCGACgGCGGCG-CCGgccgCGGc--- -3'
miRNA:   3'- -CGAGUUGaCGCCGUaGGCa---GUCaagu -5'
9218 5' -52.2 NC_002512.2 + 105057 0.67 0.985687
Target:  5'- cGCUCGGCgacgGCGGCG--UGUCGGggUAg -3'
miRNA:   3'- -CGAGUUGa---CGCCGUagGCAGUCaaGU- -5'
9218 5' -52.2 NC_002512.2 + 28278 0.67 0.985517
Target:  5'- cGCUCGGCgcugGCGGagaacuuCAUCCGcUCGGUg-- -3'
miRNA:   3'- -CGAGUUGa---CGCC-------GUAGGC-AGUCAagu -5'
9218 5' -52.2 NC_002512.2 + 171816 0.68 0.983914
Target:  5'- cGCUCcuGCUGCccGGCAUCCGguaccgCGGgaCGg -3'
miRNA:   3'- -CGAGu-UGACG--CCGUAGGCa-----GUCaaGU- -5'
9218 5' -52.2 NC_002512.2 + 4566 0.68 0.979876
Target:  5'- --aCGGCUGCGGCGUCUGgggCGGc--- -3'
miRNA:   3'- cgaGUUGACGCCGUAGGCa--GUCaagu -5'
9218 5' -52.2 NC_002512.2 + 128817 0.68 0.975128
Target:  5'- aGgUCGGCgGCGGCG-CUGUCGGcgCAg -3'
miRNA:   3'- -CgAGUUGaCGCCGUaGGCAGUCaaGU- -5'
9218 5' -52.2 NC_002512.2 + 11997 0.68 0.975128
Target:  5'- cGCUCGACgacGCGGCcgCCGaucUCGGa--- -3'
miRNA:   3'- -CGAGUUGa--CGCCGuaGGC---AGUCaagu -5'
9218 5' -52.2 NC_002512.2 + 7035 0.68 0.975128
Target:  5'- gGCUCGucguucgggACgaaGCGGCAguUCCGUCGGaagUCGc -3'
miRNA:   3'- -CGAGU---------UGa--CGCCGU--AGGCAGUCa--AGU- -5'
9218 5' -52.2 NC_002512.2 + 91790 0.68 0.975128
Target:  5'- gGC-CAGCgUGCGGCugcGUCuCGUCAGcgCAg -3'
miRNA:   3'- -CGaGUUG-ACGCCG---UAG-GCAGUCaaGU- -5'
9218 5' -52.2 NC_002512.2 + 137794 0.68 0.973556
Target:  5'- cGCUCGGCgggccgcgcguccgGCGGcCGUCCGUCucguagcGUUCc -3'
miRNA:   3'- -CGAGUUGa-------------CGCC-GUAGGCAGu------CAAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.