miRNA display CGI


Results 1 - 20 of 498 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9222 3' -61.3 NC_002512.2 + 110499 0.66 0.82983
Target:  5'- cGGCGUCauguucggguugcggCcgCgCGCCGCgAGCgaGUCGCc -3'
miRNA:   3'- -CCGCAG---------------GuaG-GCGGCG-UCGggCAGCG- -5'
9222 3' -61.3 NC_002512.2 + 145399 0.66 0.826702
Target:  5'- cGGCGUCCgggGUCCGggucuuCUuCGGCUCGUcCGCc -3'
miRNA:   3'- -CCGCAGG---UAGGC------GGcGUCGGGCA-GCG- -5'
9222 3' -61.3 NC_002512.2 + 25858 0.66 0.826702
Target:  5'- gGGCGagaGUUCGCCGuCGGCCCGcacgaaGCc -3'
miRNA:   3'- -CCGCaggUAGGCGGC-GUCGGGCag----CG- -5'
9222 3' -61.3 NC_002512.2 + 128120 0.66 0.826702
Target:  5'- cGGCG-CCGUCuCGCCgaaggucaggcgGCGGCUgGUCu- -3'
miRNA:   3'- -CCGCaGGUAG-GCGG------------CGUCGGgCAGcg -5'
9222 3' -61.3 NC_002512.2 + 76699 0.66 0.826702
Target:  5'- gGGUG-CCGcccUCCccaCCGCuGCCCGcCGCc -3'
miRNA:   3'- -CCGCaGGU---AGGc--GGCGuCGGGCaGCG- -5'
9222 3' -61.3 NC_002512.2 + 88145 0.66 0.826702
Target:  5'- aGGgGaCgAUCCGcCCGUGGCC-GUCGUg -3'
miRNA:   3'- -CCgCaGgUAGGC-GGCGUCGGgCAGCG- -5'
9222 3' -61.3 NC_002512.2 + 128905 0.66 0.826702
Target:  5'- uGGCGaUCCGcCCGCCGCGGgagcugaCCGagGa -3'
miRNA:   3'- -CCGC-AGGUaGGCGGCGUCg------GGCagCg -5'
9222 3' -61.3 NC_002512.2 + 151021 0.66 0.826702
Target:  5'- uGGCGacgcgagCCA-CCucgagGCgGCGGCCCGUcaCGCg -3'
miRNA:   3'- -CCGCa------GGUaGG-----CGgCGUCGGGCA--GCG- -5'
9222 3' -61.3 NC_002512.2 + 161863 0.66 0.826702
Target:  5'- cGGCgGUCC-UCCcggGUCGguGCgucUCGUCGCu -3'
miRNA:   3'- -CCG-CAGGuAGG---CGGCguCG---GGCAGCG- -5'
9222 3' -61.3 NC_002512.2 + 187422 0.66 0.826702
Target:  5'- aGUGUCUGUCCGCUGCcGCUUcauucuUCGCc -3'
miRNA:   3'- cCGCAGGUAGGCGGCGuCGGGc-----AGCG- -5'
9222 3' -61.3 NC_002512.2 + 98363 0.66 0.826702
Target:  5'- uGGCGUCCuUCaCGgCGUcuCCCGUCcCg -3'
miRNA:   3'- -CCGCAGGuAG-GCgGCGucGGGCAGcG- -5'
9222 3' -61.3 NC_002512.2 + 102292 0.66 0.826702
Target:  5'- cGCGUCgA-CCGCCagGGCgaCGUCGCg -3'
miRNA:   3'- cCGCAGgUaGGCGGcgUCGg-GCAGCG- -5'
9222 3' -61.3 NC_002512.2 + 117466 0.66 0.826702
Target:  5'- cGGUGUCgAUCgCGCUGCucagcaAGCUCGggcUGCa -3'
miRNA:   3'- -CCGCAGgUAG-GCGGCG------UCGGGCa--GCG- -5'
9222 3' -61.3 NC_002512.2 + 143623 0.66 0.826702
Target:  5'- cGGCGUUCGUCCcuccccGCCuCGGCCC-UCu- -3'
miRNA:   3'- -CCGCAGGUAGG------CGGcGUCGGGcAGcg -5'
9222 3' -61.3 NC_002512.2 + 145342 0.66 0.826702
Target:  5'- aGCG-CC--UCGCCGCGccGCCCGaCGCc -3'
miRNA:   3'- cCGCaGGuaGGCGGCGU--CGGGCaGCG- -5'
9222 3' -61.3 NC_002512.2 + 75895 0.66 0.826702
Target:  5'- cGGCGUCgcucuuucUGUuuGCCGCcGCCgG-CGCc -3'
miRNA:   3'- -CCGCAG--------GUAggCGGCGuCGGgCaGCG- -5'
9222 3' -61.3 NC_002512.2 + 221832 0.66 0.826702
Target:  5'- cGGCGUCCGacCCGCgGgGGCgCC-UCGg -3'
miRNA:   3'- -CCGCAGGUa-GGCGgCgUCG-GGcAGCg -5'
9222 3' -61.3 NC_002512.2 + 51804 0.66 0.825917
Target:  5'- -uCGUCCAgaagcugUCC-CCGguGCuggugCCGUCGCa -3'
miRNA:   3'- ccGCAGGU-------AGGcGGCguCG-----GGCAGCG- -5'
9222 3' -61.3 NC_002512.2 + 205889 0.66 0.825916
Target:  5'- cGCGUCgCGgguccCCGCuCGCgggacccguucacAGCUCGUCGUa -3'
miRNA:   3'- cCGCAG-GUa----GGCG-GCG-------------UCGGGCAGCG- -5'
9222 3' -61.3 NC_002512.2 + 215086 0.66 0.825129
Target:  5'- cGGCGggaCCGaggacuucgucgCCGCCGCGGCCgacCGCc -3'
miRNA:   3'- -CCGCa--GGUa-----------GGCGGCGUCGGgcaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.