miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9222 5' -57 NC_002512.2 + 93047 0.66 0.923799
Target:  5'- gGGAcGGCUGcUGCCCcaggcGCUGuaccgGGACg -3'
miRNA:   3'- aCCU-CCGACaGCGGGu----CGACua---UCUG- -5'
9222 5' -57 NC_002512.2 + 166388 0.66 0.923799
Target:  5'- cUGGAGGagUGUucCGCCCGGggGAUGGuCc -3'
miRNA:   3'- -ACCUCCg-ACA--GCGGGUCgaCUAUCuG- -5'
9222 5' -57 NC_002512.2 + 153464 0.66 0.922183
Target:  5'- cGGAGGUUgggucugcguuaccGUCGUCCAGUccggGGACg -3'
miRNA:   3'- aCCUCCGA--------------CAGCGGGUCGacuaUCUG- -5'
9222 5' -57 NC_002512.2 + 80198 0.66 0.918333
Target:  5'- ----uGCUGUCGUCCAGCgUGAaguUGGGCc -3'
miRNA:   3'- accucCGACAGCGGGUCG-ACU---AUCUG- -5'
9222 5' -57 NC_002512.2 + 132738 0.66 0.918333
Target:  5'- aGGAcGCcgUGUCGCCCaggcAGCUGAUGuccugcgucGACu -3'
miRNA:   3'- aCCUcCG--ACAGCGGG----UCGACUAU---------CUG- -5'
9222 5' -57 NC_002512.2 + 158533 0.66 0.912637
Target:  5'- ----uGCUcGUCaCCCGGCUGGUGGACc -3'
miRNA:   3'- accucCGA-CAGcGGGUCGACUAUCUG- -5'
9222 5' -57 NC_002512.2 + 92569 0.66 0.912637
Target:  5'- cGGAGGCgccGaCGCCgCGGCcGGgagGGGCg -3'
miRNA:   3'- aCCUCCGa--CaGCGG-GUCGaCUa--UCUG- -5'
9222 5' -57 NC_002512.2 + 194033 0.66 0.912637
Target:  5'- gGGAgucGGCgauccagGcCGCCUGGCUGGUgaGGGCg -3'
miRNA:   3'- aCCU---CCGa------CaGCGGGUCGACUA--UCUG- -5'
9222 5' -57 NC_002512.2 + 200711 0.66 0.912637
Target:  5'- gUGGcgucGGGCUGcCGCCCGGCgguccgaacgGGUcguaccGGGCg -3'
miRNA:   3'- -ACC----UCCGACaGCGGGUCGa---------CUA------UCUG- -5'
9222 5' -57 NC_002512.2 + 47456 0.66 0.912637
Target:  5'- cGGAGGCcGagGCCgAGUUccgcaaggcGGUGGACa -3'
miRNA:   3'- aCCUCCGaCagCGGgUCGA---------CUAUCUG- -5'
9222 5' -57 NC_002512.2 + 207436 0.66 0.912637
Target:  5'- cGGAgaucuGGCcGUaguaGCCCAGCgGAUGGGg -3'
miRNA:   3'- aCCU-----CCGaCAg---CGGGUCGaCUAUCUg -5'
9222 5' -57 NC_002512.2 + 131069 0.66 0.906713
Target:  5'- cGGAGGCcgauccGUCGCuCCGGCcgccggGGUaccuGGACg -3'
miRNA:   3'- aCCUCCGa-----CAGCG-GGUCGa-----CUA----UCUG- -5'
9222 5' -57 NC_002512.2 + 200386 0.66 0.906108
Target:  5'- cGGGGGCUGcaggaucUCGgCCGGgaGGgagcAGACg -3'
miRNA:   3'- aCCUCCGAC-------AGCgGGUCgaCUa---UCUG- -5'
9222 5' -57 NC_002512.2 + 75098 0.66 0.900563
Target:  5'- cGGGGGCUcgacGUCGCCgc-CUGGcGGACa -3'
miRNA:   3'- aCCUCCGA----CAGCGGgucGACUaUCUG- -5'
9222 5' -57 NC_002512.2 + 87129 0.67 0.89419
Target:  5'- cGGAGGCgg-CGCaCgAGCUGGacaAGGCg -3'
miRNA:   3'- aCCUCCGacaGCG-GgUCGACUa--UCUG- -5'
9222 5' -57 NC_002512.2 + 222732 0.67 0.887596
Target:  5'- cUGGAcGGCaa-CGgCCAGCUGcUGGACg -3'
miRNA:   3'- -ACCU-CCGacaGCgGGUCGACuAUCUG- -5'
9222 5' -57 NC_002512.2 + 81908 0.67 0.887596
Target:  5'- cGGAGGUcGUgCGCCguGgaGggGGACg -3'
miRNA:   3'- aCCUCCGaCA-GCGGguCgaCuaUCUG- -5'
9222 5' -57 NC_002512.2 + 108390 0.67 0.887596
Target:  5'- gGGGGGCga--GCCCGGUgGGUGGGg -3'
miRNA:   3'- aCCUCCGacagCGGGUCGaCUAUCUg -5'
9222 5' -57 NC_002512.2 + 156322 0.67 0.873763
Target:  5'- cGGGGaGCUcGUCGagCGGCUGcgGGACc -3'
miRNA:   3'- aCCUC-CGA-CAGCggGUCGACuaUCUG- -5'
9222 5' -57 NC_002512.2 + 49742 0.67 0.873049
Target:  5'- cGGAGGCcGUccuggacCGCCCGacGCUGGacgccaucaUGGACa -3'
miRNA:   3'- aCCUCCGaCA-------GCGGGU--CGACU---------AUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.