miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9223 3' -56.4 NC_002512.2 + 227938 0.66 0.95295
Target:  5'- gCCGGCggacgAGGCGggggagcgcgGGggAGCCGGAGAg- -3'
miRNA:   3'- -GGUCGg----UCCGCa---------UCa-UCGGCCUCUac -5'
9223 3' -56.4 NC_002512.2 + 25940 0.66 0.951775
Target:  5'- gUCGGCCGGGggccacgagggccuCGUAGUAG-CGGAGc-- -3'
miRNA:   3'- -GGUCGGUCC--------------GCAUCAUCgGCCUCuac -5'
9223 3' -56.4 NC_002512.2 + 227459 0.66 0.948957
Target:  5'- gCuGCCGGGgG-AGaGGCCGGGGGc- -3'
miRNA:   3'- gGuCGGUCCgCaUCaUCGGCCUCUac -5'
9223 3' -56.4 NC_002512.2 + 142067 0.66 0.948957
Target:  5'- cCCGGCCGGGgGauc--GCuCGGGGGUGc -3'
miRNA:   3'- -GGUCGGUCCgCaucauCG-GCCUCUAC- -5'
9223 3' -56.4 NC_002512.2 + 195053 0.66 0.948957
Target:  5'- gCGGCCcgcGGGCGggagGGUcguccGGUCGGGGAc- -3'
miRNA:   3'- gGUCGG---UCCGCa---UCA-----UCGGCCUCUac -5'
9223 3' -56.4 NC_002512.2 + 196428 0.66 0.948957
Target:  5'- gCGGCCGGGuCGggAGaGGUCGGGGccAUGg -3'
miRNA:   3'- gGUCGGUCC-GCa-UCaUCGGCCUC--UAC- -5'
9223 3' -56.4 NC_002512.2 + 205052 0.66 0.948957
Target:  5'- aCCGGCCgcGGGCccGGaccuacUGGCUGGAGAg- -3'
miRNA:   3'- -GGUCGG--UCCGcaUC------AUCGGCCUCUac -5'
9223 3' -56.4 NC_002512.2 + 86260 0.66 0.940313
Target:  5'- -gGGCCgAGGCGgggAGggacgaacGCCGGAGAc- -3'
miRNA:   3'- ggUCGG-UCCGCa--UCau------CGGCCUCUac -5'
9223 3' -56.4 NC_002512.2 + 103247 0.66 0.940313
Target:  5'- aCGGCCGcGGCG-AG-GGCauggaGGAGGUGa -3'
miRNA:   3'- gGUCGGU-CCGCaUCaUCGg----CCUCUAC- -5'
9223 3' -56.4 NC_002512.2 + 120747 0.66 0.940313
Target:  5'- gCAGCCGGGCGgcgAGUccgacguGCUGGAc--- -3'
miRNA:   3'- gGUCGGUCCGCa--UCAu------CGGCCUcuac -5'
9223 3' -56.4 NC_002512.2 + 56898 0.66 0.940313
Target:  5'- gUAGCaCAGGaCGggcaGGUcgaugaGGCUGGAGAUGa -3'
miRNA:   3'- gGUCG-GUCC-GCa---UCA------UCGGCCUCUAC- -5'
9223 3' -56.4 NC_002512.2 + 121356 0.66 0.935656
Target:  5'- -gGGCCGuuggacGGCGgAGagGGCCGGAGAg- -3'
miRNA:   3'- ggUCGGU------CCGCaUCa-UCGGCCUCUac -5'
9223 3' -56.4 NC_002512.2 + 97214 0.66 0.935656
Target:  5'- gCgGGCCGGGCGggacgucgAGgcGCUgGGAGAg- -3'
miRNA:   3'- -GgUCGGUCCGCa-------UCauCGG-CCUCUac -5'
9223 3' -56.4 NC_002512.2 + 96527 0.66 0.935656
Target:  5'- gCCGcGCC-GGCGgugugAGccggGGCCGGGGAUc -3'
miRNA:   3'- -GGU-CGGuCCGCa----UCa---UCGGCCUCUAc -5'
9223 3' -56.4 NC_002512.2 + 76104 0.67 0.930775
Target:  5'- -aAGCUgAGGCGgGGgcGCCGG-GGUGg -3'
miRNA:   3'- ggUCGG-UCCGCaUCauCGGCCuCUAC- -5'
9223 3' -56.4 NC_002512.2 + 162 0.67 0.930775
Target:  5'- gCGGCaggAGGCGgcagAGgaGGCCGGAGGg- -3'
miRNA:   3'- gGUCGg--UCCGCa---UCa-UCGGCCUCUac -5'
9223 3' -56.4 NC_002512.2 + 223912 0.67 0.930775
Target:  5'- gCGGCgCGGGCGagAGgucgAGCCGGAcGggGa -3'
miRNA:   3'- gGUCG-GUCCGCa-UCa---UCGGCCU-CuaC- -5'
9223 3' -56.4 NC_002512.2 + 31660 0.67 0.930775
Target:  5'- aCGGCgCGGGCGcggccgUGGUGGCggaCGGGGAg- -3'
miRNA:   3'- gGUCG-GUCCGC------AUCAUCG---GCCUCUac -5'
9223 3' -56.4 NC_002512.2 + 227003 0.67 0.930775
Target:  5'- -gGGUgAGGCGgcGcgAGCUGGAGAa- -3'
miRNA:   3'- ggUCGgUCCGCauCa-UCGGCCUCUac -5'
9223 3' -56.4 NC_002512.2 + 118594 0.67 0.930775
Target:  5'- cCCAGaccCCGGGCGUc-UGGCCGcGGGAc- -3'
miRNA:   3'- -GGUC---GGUCCGCAucAUCGGC-CUCUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.