miRNA display CGI


Results 1 - 20 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9223 5' -61.5 NC_002512.2 + 106710 0.66 0.818777
Target:  5'- cCCGUcccgccucGGCCUCGGCCUCggcggcgaUCgCGGCgCCg -3'
miRNA:   3'- aGGUA--------CCGGGGCUGGAG--------AGgGCUG-GG- -5'
9223 5' -61.5 NC_002512.2 + 219294 0.66 0.818777
Target:  5'- gCCGUGGCCC--GCUUCgucgUCCgCGGCCa -3'
miRNA:   3'- aGGUACCGGGgcUGGAG----AGG-GCUGGg -5'
9223 5' -61.5 NC_002512.2 + 129994 0.66 0.818777
Target:  5'- cCCucgacgGGCCgCG-CCUcCUCCCGGUCCa -3'
miRNA:   3'- aGGua----CCGGgGCuGGA-GAGGGCUGGG- -5'
9223 5' -61.5 NC_002512.2 + 94669 0.66 0.818777
Target:  5'- cCCggGGCCggggGGCC-C-CCCGGCCCg -3'
miRNA:   3'- aGGuaCCGGgg--CUGGaGaGGGCUGGG- -5'
9223 5' -61.5 NC_002512.2 + 182440 0.66 0.818777
Target:  5'- ----cGGCCUCGGCCUC-CgCCGugCg -3'
miRNA:   3'- agguaCCGGGGCUGGAGaG-GGCugGg -5'
9223 5' -61.5 NC_002512.2 + 182381 0.66 0.818777
Target:  5'- gUCgGUGGUcugcguCCUGGCCagcgUCUCCCcGGCCUu -3'
miRNA:   3'- -AGgUACCG------GGGCUGG----AGAGGG-CUGGG- -5'
9223 5' -61.5 NC_002512.2 + 182061 0.66 0.818777
Target:  5'- gCCAgccGCgCCGACCUCagCCgCGGCuCCg -3'
miRNA:   3'- aGGUac-CGgGGCUGGAGa-GG-GCUG-GG- -5'
9223 5' -61.5 NC_002512.2 + 113000 0.66 0.818777
Target:  5'- gCCccGGCCCCG-CCgccagCCgCGACCa -3'
miRNA:   3'- aGGuaCCGGGGCuGGaga--GG-GCUGGg -5'
9223 5' -61.5 NC_002512.2 + 211833 0.66 0.818777
Target:  5'- uUCC-UGGaCCCCGGg--CUCUCGGCCg -3'
miRNA:   3'- -AGGuACC-GGGGCUggaGAGGGCUGGg -5'
9223 5' -61.5 NC_002512.2 + 214926 0.66 0.818777
Target:  5'- aCCGcGGCCgCGGCUUCguccUCCCGugGCCg -3'
miRNA:   3'- aGGUaCCGGgGCUGGAG----AGGGC--UGGg -5'
9223 5' -61.5 NC_002512.2 + 115818 0.66 0.818777
Target:  5'- -aCAUGGCCCgcugCGccuACCgcugUUCCgGGCCCg -3'
miRNA:   3'- agGUACCGGG----GC---UGGa---GAGGgCUGGG- -5'
9223 5' -61.5 NC_002512.2 + 76539 0.66 0.818777
Target:  5'- cCCAgcgGGaCCcgCCGACC-CggaCCGGCCCa -3'
miRNA:   3'- aGGUa--CC-GG--GGCUGGaGag-GGCUGGG- -5'
9223 5' -61.5 NC_002512.2 + 108587 0.66 0.818777
Target:  5'- uUUCGgggGGCCCCGgggagcggcgGCCgCgggCCCGuCCCg -3'
miRNA:   3'- -AGGUa--CCGGGGC----------UGGaGa--GGGCuGGG- -5'
9223 5' -61.5 NC_002512.2 + 52483 0.66 0.818777
Target:  5'- aCCGUG--UCCGACUcauucgUCUCCCaGACCCc -3'
miRNA:   3'- aGGUACcgGGGCUGG------AGAGGG-CUGGG- -5'
9223 5' -61.5 NC_002512.2 + 140544 0.66 0.810706
Target:  5'- cUCCGcGGCCaCCGAggugcaCgagCUCuCCGACCUg -3'
miRNA:   3'- -AGGUaCCGG-GGCUg-----Ga--GAG-GGCUGGG- -5'
9223 5' -61.5 NC_002512.2 + 84833 0.66 0.810706
Target:  5'- gUCCAcgUGGUcgaucuCCCGGCCg-UCCCGggcguugcgcGCCCg -3'
miRNA:   3'- -AGGU--ACCG------GGGCUGGagAGGGC----------UGGG- -5'
9223 5' -61.5 NC_002512.2 + 147759 0.66 0.810706
Target:  5'- -aCGUGcGCCagcgCGGCCg-UCCCGACUCg -3'
miRNA:   3'- agGUAC-CGGg---GCUGGagAGGGCUGGG- -5'
9223 5' -61.5 NC_002512.2 + 23762 0.66 0.810706
Target:  5'- aCCGgacGCCCCG-CUgcgCCUGACCCu -3'
miRNA:   3'- aGGUac-CGGGGCuGGagaGGGCUGGG- -5'
9223 5' -61.5 NC_002512.2 + 99770 0.66 0.810706
Target:  5'- cCCcgGGCCUCcagcuCC-CUCUCGACCg -3'
miRNA:   3'- aGGuaCCGGGGcu---GGaGAGGGCUGGg -5'
9223 5' -61.5 NC_002512.2 + 149006 0.66 0.810706
Target:  5'- gCCGgggGGCCgCCgcgGACCg--CCCGACaCCg -3'
miRNA:   3'- aGGUa--CCGG-GG---CUGGagaGGGCUG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.