Results 21 - 40 of 116 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9224 | 3' | -56.6 | NC_002512.2 | + | 107605 | 0.66 | 0.943957 |
Target: 5'- cGGcUCGCUGaCgggcuccaggACGUCCCCGcggccgccggGGAAGACc -3' miRNA: 3'- -UC-AGCGAC-G----------UGCAGGGGC----------UCUUCUGc -5' |
|||||||
9224 | 3' | -56.6 | NC_002512.2 | + | 107145 | 0.66 | 0.943957 |
Target: 5'- gGG-CGCccccaucaGCGCGUUuccgCCCGGGAGGGCGu -3' miRNA: 3'- -UCaGCGa-------CGUGCAG----GGGCUCUUCUGC- -5' |
|||||||
9224 | 3' | -56.6 | NC_002512.2 | + | 171056 | 0.66 | 0.939519 |
Target: 5'- --aCGCcGC-CGUCCUucaCGAGAAGAUGa -3' miRNA: 3'- ucaGCGaCGuGCAGGG---GCUCUUCUGC- -5' |
|||||||
9224 | 3' | -56.6 | NC_002512.2 | + | 95174 | 0.66 | 0.934861 |
Target: 5'- -cUCGCguagGCggagaGCG-CCCgCGAGAGGACGu -3' miRNA: 3'- ucAGCGa---CG-----UGCaGGG-GCUCUUCUGC- -5' |
|||||||
9224 | 3' | -56.6 | NC_002512.2 | + | 15288 | 0.66 | 0.934861 |
Target: 5'- uAGUCggGCUGCAggaagagcgucuCGUCgCCCaggcggGAGggGACGa -3' miRNA: 3'- -UCAG--CGACGU------------GCAG-GGG------CUCuuCUGC- -5' |
|||||||
9224 | 3' | -56.6 | NC_002512.2 | + | 13408 | 0.66 | 0.934861 |
Target: 5'- --gCGCUGCGCcUCCCUGuG-GGACGc -3' miRNA: 3'- ucaGCGACGUGcAGGGGCuCuUCUGC- -5' |
|||||||
9224 | 3' | -56.6 | NC_002512.2 | + | 89808 | 0.66 | 0.934861 |
Target: 5'- gGGUCGCcG-AUGaCgCCGAGAGGACGu -3' miRNA: 3'- -UCAGCGaCgUGCaGgGGCUCUUCUGC- -5' |
|||||||
9224 | 3' | -56.6 | NC_002512.2 | + | 167454 | 0.66 | 0.934861 |
Target: 5'- cGUcCGgaGCAuCGUCUCCGAGGucgucGACGu -3' miRNA: 3'- uCA-GCgaCGU-GCAGGGGCUCUu----CUGC- -5' |
|||||||
9224 | 3' | -56.6 | NC_002512.2 | + | 21918 | 0.66 | 0.932935 |
Target: 5'- cGUCGCcGCuACGgagggcgacgacgUgCCGAGAGGACGa -3' miRNA: 3'- uCAGCGaCG-UGCa------------GgGGCUCUUCUGC- -5' |
|||||||
9224 | 3' | -56.6 | NC_002512.2 | + | 142198 | 0.67 | 0.929981 |
Target: 5'- cGUCGCcGCGCGUCCCguCGGucucGACGu -3' miRNA: 3'- uCAGCGaCGUGCAGGG--GCUcuu-CUGC- -5' |
|||||||
9224 | 3' | -56.6 | NC_002512.2 | + | 97973 | 0.67 | 0.929981 |
Target: 5'- cAGgggCGCcgGUACG-CCCCGGGGAccuucGACGa -3' miRNA: 3'- -UCa--GCGa-CGUGCaGGGGCUCUU-----CUGC- -5' |
|||||||
9224 | 3' | -56.6 | NC_002512.2 | + | 19841 | 0.67 | 0.929981 |
Target: 5'- aGGUCG----ACGUCCCCGgagcGGAAGGCGc -3' miRNA: 3'- -UCAGCgacgUGCAGGGGC----UCUUCUGC- -5' |
|||||||
9224 | 3' | -56.6 | NC_002512.2 | + | 182791 | 0.67 | 0.929481 |
Target: 5'- gAG-CGuCUGCGCGUucgucagUCCCGAGAGcGACu -3' miRNA: 3'- -UCaGC-GACGUGCA-------GGGGCUCUU-CUGc -5' |
|||||||
9224 | 3' | -56.6 | NC_002512.2 | + | 123127 | 0.67 | 0.92488 |
Target: 5'- cGUCgGCgGC-CGUCCCgGGGGacgGGGCGg -3' miRNA: 3'- uCAG-CGaCGuGCAGGGgCUCU---UCUGC- -5' |
|||||||
9224 | 3' | -56.6 | NC_002512.2 | + | 7250 | 0.67 | 0.92488 |
Target: 5'- cGUCGCgGCggagcgGCGUCCgUCGGGAucGGGCGc -3' miRNA: 3'- uCAGCGaCG------UGCAGG-GGCUCU--UCUGC- -5' |
|||||||
9224 | 3' | -56.6 | NC_002512.2 | + | 94501 | 0.67 | 0.92488 |
Target: 5'- cAGUCGUcggGCGCGUCUUCGAacccgcccAGGACGa -3' miRNA: 3'- -UCAGCGa--CGUGCAGGGGCUc-------UUCUGC- -5' |
|||||||
9224 | 3' | -56.6 | NC_002512.2 | + | 95673 | 0.67 | 0.92488 |
Target: 5'- -cUCGUgagcGCGCGUCCgCCGGGccuccggcgGGGACGg -3' miRNA: 3'- ucAGCGa---CGUGCAGG-GGCUC---------UUCUGC- -5' |
|||||||
9224 | 3' | -56.6 | NC_002512.2 | + | 4495 | 0.67 | 0.919557 |
Target: 5'- ---gGC-GC-CGUCCCCGAaGAGGAUGg -3' miRNA: 3'- ucagCGaCGuGCAGGGGCU-CUUCUGC- -5' |
|||||||
9224 | 3' | -56.6 | NC_002512.2 | + | 147676 | 0.67 | 0.919557 |
Target: 5'- --cCGCUuCcCG-CCCCGGGAGGACGc -3' miRNA: 3'- ucaGCGAcGuGCaGGGGCUCUUCUGC- -5' |
|||||||
9224 | 3' | -56.6 | NC_002512.2 | + | 79622 | 0.67 | 0.919557 |
Target: 5'- gGGUCGCgguacucgGCGuCGUCCCCcucgucguccGAGAAcGCGa -3' miRNA: 3'- -UCAGCGa-------CGU-GCAGGGG----------CUCUUcUGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home