miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9224 3' -56.6 NC_002512.2 + 107605 0.66 0.943957
Target:  5'- cGGcUCGCUGaCgggcuccaggACGUCCCCGcggccgccggGGAAGACc -3'
miRNA:   3'- -UC-AGCGAC-G----------UGCAGGGGC----------UCUUCUGc -5'
9224 3' -56.6 NC_002512.2 + 107145 0.66 0.943957
Target:  5'- gGG-CGCccccaucaGCGCGUUuccgCCCGGGAGGGCGu -3'
miRNA:   3'- -UCaGCGa-------CGUGCAG----GGGCUCUUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 171056 0.66 0.939519
Target:  5'- --aCGCcGC-CGUCCUucaCGAGAAGAUGa -3'
miRNA:   3'- ucaGCGaCGuGCAGGG---GCUCUUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 95174 0.66 0.934861
Target:  5'- -cUCGCguagGCggagaGCG-CCCgCGAGAGGACGu -3'
miRNA:   3'- ucAGCGa---CG-----UGCaGGG-GCUCUUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 15288 0.66 0.934861
Target:  5'- uAGUCggGCUGCAggaagagcgucuCGUCgCCCaggcggGAGggGACGa -3'
miRNA:   3'- -UCAG--CGACGU------------GCAG-GGG------CUCuuCUGC- -5'
9224 3' -56.6 NC_002512.2 + 13408 0.66 0.934861
Target:  5'- --gCGCUGCGCcUCCCUGuG-GGACGc -3'
miRNA:   3'- ucaGCGACGUGcAGGGGCuCuUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 89808 0.66 0.934861
Target:  5'- gGGUCGCcG-AUGaCgCCGAGAGGACGu -3'
miRNA:   3'- -UCAGCGaCgUGCaGgGGCUCUUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 167454 0.66 0.934861
Target:  5'- cGUcCGgaGCAuCGUCUCCGAGGucgucGACGu -3'
miRNA:   3'- uCA-GCgaCGU-GCAGGGGCUCUu----CUGC- -5'
9224 3' -56.6 NC_002512.2 + 21918 0.66 0.932935
Target:  5'- cGUCGCcGCuACGgagggcgacgacgUgCCGAGAGGACGa -3'
miRNA:   3'- uCAGCGaCG-UGCa------------GgGGCUCUUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 142198 0.67 0.929981
Target:  5'- cGUCGCcGCGCGUCCCguCGGucucGACGu -3'
miRNA:   3'- uCAGCGaCGUGCAGGG--GCUcuu-CUGC- -5'
9224 3' -56.6 NC_002512.2 + 97973 0.67 0.929981
Target:  5'- cAGgggCGCcgGUACG-CCCCGGGGAccuucGACGa -3'
miRNA:   3'- -UCa--GCGa-CGUGCaGGGGCUCUU-----CUGC- -5'
9224 3' -56.6 NC_002512.2 + 19841 0.67 0.929981
Target:  5'- aGGUCG----ACGUCCCCGgagcGGAAGGCGc -3'
miRNA:   3'- -UCAGCgacgUGCAGGGGC----UCUUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 182791 0.67 0.929481
Target:  5'- gAG-CGuCUGCGCGUucgucagUCCCGAGAGcGACu -3'
miRNA:   3'- -UCaGC-GACGUGCA-------GGGGCUCUU-CUGc -5'
9224 3' -56.6 NC_002512.2 + 123127 0.67 0.92488
Target:  5'- cGUCgGCgGC-CGUCCCgGGGGacgGGGCGg -3'
miRNA:   3'- uCAG-CGaCGuGCAGGGgCUCU---UCUGC- -5'
9224 3' -56.6 NC_002512.2 + 7250 0.67 0.92488
Target:  5'- cGUCGCgGCggagcgGCGUCCgUCGGGAucGGGCGc -3'
miRNA:   3'- uCAGCGaCG------UGCAGG-GGCUCU--UCUGC- -5'
9224 3' -56.6 NC_002512.2 + 94501 0.67 0.92488
Target:  5'- cAGUCGUcggGCGCGUCUUCGAacccgcccAGGACGa -3'
miRNA:   3'- -UCAGCGa--CGUGCAGGGGCUc-------UUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 95673 0.67 0.92488
Target:  5'- -cUCGUgagcGCGCGUCCgCCGGGccuccggcgGGGACGg -3'
miRNA:   3'- ucAGCGa---CGUGCAGG-GGCUC---------UUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 4495 0.67 0.919557
Target:  5'- ---gGC-GC-CGUCCCCGAaGAGGAUGg -3'
miRNA:   3'- ucagCGaCGuGCAGGGGCU-CUUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 147676 0.67 0.919557
Target:  5'- --cCGCUuCcCG-CCCCGGGAGGACGc -3'
miRNA:   3'- ucaGCGAcGuGCaGGGGCUCUUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 79622 0.67 0.919557
Target:  5'- gGGUCGCgguacucgGCGuCGUCCCCcucgucguccGAGAAcGCGa -3'
miRNA:   3'- -UCAGCGa-------CGU-GCAGGGG----------CUCUUcUGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.