Results 1 - 20 of 212 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9224 | 5' | -60.3 | NC_002512.2 | + | 169002 | 0.66 | 0.841071 |
Target: 5'- gGUCGcGCgCCGGCucGGcGAuCCGGGCGGg -3' miRNA: 3'- -CAGC-UG-GGCCGu-CCaCU-GGUCCGUCg -5' |
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9224 | 5' | -60.3 | NC_002512.2 | + | 131525 | 0.66 | 0.841071 |
Target: 5'- -aCGACgCCGGaGGGaGACgAGGCGGa -3' miRNA: 3'- caGCUG-GGCCgUCCaCUGgUCCGUCg -5' |
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9224 | 5' | -60.3 | NC_002512.2 | + | 126439 | 0.66 | 0.841071 |
Target: 5'- -cCG-CCCGGCcGGcGACgGcGGCGGCc -3' miRNA: 3'- caGCuGGGCCGuCCaCUGgU-CCGUCG- -5' |
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9224 | 5' | -60.3 | NC_002512.2 | + | 113777 | 0.66 | 0.841071 |
Target: 5'- cGUCGAUCUcgGGCAcGGUGA---GGUAGCg -3' miRNA: 3'- -CAGCUGGG--CCGU-CCACUgguCCGUCG- -5' |
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9224 | 5' | -60.3 | NC_002512.2 | + | 94654 | 0.66 | 0.841071 |
Target: 5'- -aCGGCCUcgaGGCGGcccggGGCCGGGgGGCc -3' miRNA: 3'- caGCUGGG---CCGUCca---CUGGUCCgUCG- -5' |
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9224 | 5' | -60.3 | NC_002512.2 | + | 37064 | 0.66 | 0.841071 |
Target: 5'- cGUCcACCUGGCcccGGUGcgaucgccCCGGGUGGCg -3' miRNA: 3'- -CAGcUGGGCCGu--CCACu-------GGUCCGUCG- -5' |
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9224 | 5' | -60.3 | NC_002512.2 | + | 227933 | 0.66 | 0.841071 |
Target: 5'- -cCGACgCCGGCGGacgaGGCgGGGgAGCg -3' miRNA: 3'- caGCUG-GGCCGUCca--CUGgUCCgUCG- -5' |
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9224 | 5' | -60.3 | NC_002512.2 | + | 111893 | 0.66 | 0.8403 |
Target: 5'- cUCGAggcaauccagcacCCCGaGCAGcacGGCCAGGCGGg -3' miRNA: 3'- cAGCU-------------GGGC-CGUCca-CUGGUCCGUCg -5' |
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9224 | 5' | -60.3 | NC_002512.2 | + | 10684 | 0.66 | 0.833282 |
Target: 5'- -cCGGCCCGGCA-GUGcAgCGGGUacaggaAGCg -3' miRNA: 3'- caGCUGGGCCGUcCAC-UgGUCCG------UCG- -5' |
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9224 | 5' | -60.3 | NC_002512.2 | + | 129085 | 0.66 | 0.833282 |
Target: 5'- gGUCGACCCcgaGGaCGGGcGGCgucugcggCGGGCGGUc -3' miRNA: 3'- -CAGCUGGG---CC-GUCCaCUG--------GUCCGUCG- -5' |
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9224 | 5' | -60.3 | NC_002512.2 | + | 73176 | 0.66 | 0.833282 |
Target: 5'- --aGACCagcugCGGaCAGGUcccgcagaaguaGGCCAGGUGGCa -3' miRNA: 3'- cagCUGG-----GCC-GUCCA------------CUGGUCCGUCG- -5' |
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9224 | 5' | -60.3 | NC_002512.2 | + | 105059 | 0.66 | 0.833282 |
Target: 5'- cUCGGCgaCGGCGGcGUGuCgGGGUAGUc -3' miRNA: 3'- cAGCUGg-GCCGUC-CACuGgUCCGUCG- -5' |
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9224 | 5' | -60.3 | NC_002512.2 | + | 117526 | 0.66 | 0.833282 |
Target: 5'- aUCGugCCca-AGGUGuCCGGGCuGGCg -3' miRNA: 3'- cAGCugGGccgUCCACuGGUCCG-UCG- -5' |
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9224 | 5' | -60.3 | NC_002512.2 | + | 92192 | 0.66 | 0.833282 |
Target: 5'- --gGACaaCCGGguGGUGGCCAa-CAGCu -3' miRNA: 3'- cagCUG--GGCCguCCACUGGUccGUCG- -5' |
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9224 | 5' | -60.3 | NC_002512.2 | + | 98784 | 0.66 | 0.825328 |
Target: 5'- -gUGGCCCGGCgcaccacgucAGGUacCCcGGCGGCc -3' miRNA: 3'- caGCUGGGCCG----------UCCAcuGGuCCGUCG- -5' |
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9224 | 5' | -60.3 | NC_002512.2 | + | 120781 | 0.66 | 0.825328 |
Target: 5'- -gCGGCCguCGGCGGGggcGGCgGgacGGCGGCg -3' miRNA: 3'- caGCUGG--GCCGUCCa--CUGgU---CCGUCG- -5' |
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9224 | 5' | -60.3 | NC_002512.2 | + | 113167 | 0.66 | 0.825328 |
Target: 5'- -gCGGCCgGGCGGGacgcGACCGGcGUcGCc -3' miRNA: 3'- caGCUGGgCCGUCCa---CUGGUC-CGuCG- -5' |
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9224 | 5' | -60.3 | NC_002512.2 | + | 88980 | 0.66 | 0.825328 |
Target: 5'- gGUC--UCCGGCuucGUGGCCGGGgGGCc -3' miRNA: 3'- -CAGcuGGGCCGuc-CACUGGUCCgUCG- -5' |
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9224 | 5' | -60.3 | NC_002512.2 | + | 99968 | 0.66 | 0.825328 |
Target: 5'- aUCGGCCUGGCcccgcGGUGGCUGugucuguucucGGCGGg -3' miRNA: 3'- cAGCUGGGCCGu----CCACUGGU-----------CCGUCg -5' |
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9224 | 5' | -60.3 | NC_002512.2 | + | 7235 | 0.66 | 0.817217 |
Target: 5'- cUCGGCCCGGCc---GGCCGucGCGGCg -3' miRNA: 3'- cAGCUGGGCCGuccaCUGGUc-CGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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