miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9224 5' -60.3 NC_002512.2 + 227933 0.66 0.841071
Target:  5'- -cCGACgCCGGCGGacgaGGCgGGGgAGCg -3'
miRNA:   3'- caGCUG-GGCCGUCca--CUGgUCCgUCG- -5'
9224 5' -60.3 NC_002512.2 + 37064 0.66 0.841071
Target:  5'- cGUCcACCUGGCcccGGUGcgaucgccCCGGGUGGCg -3'
miRNA:   3'- -CAGcUGGGCCGu--CCACu-------GGUCCGUCG- -5'
9224 5' -60.3 NC_002512.2 + 94654 0.66 0.841071
Target:  5'- -aCGGCCUcgaGGCGGcccggGGCCGGGgGGCc -3'
miRNA:   3'- caGCUGGG---CCGUCca---CUGGUCCgUCG- -5'
9224 5' -60.3 NC_002512.2 + 113777 0.66 0.841071
Target:  5'- cGUCGAUCUcgGGCAcGGUGA---GGUAGCg -3'
miRNA:   3'- -CAGCUGGG--CCGU-CCACUgguCCGUCG- -5'
9224 5' -60.3 NC_002512.2 + 126439 0.66 0.841071
Target:  5'- -cCG-CCCGGCcGGcGACgGcGGCGGCc -3'
miRNA:   3'- caGCuGGGCCGuCCaCUGgU-CCGUCG- -5'
9224 5' -60.3 NC_002512.2 + 131525 0.66 0.841071
Target:  5'- -aCGACgCCGGaGGGaGACgAGGCGGa -3'
miRNA:   3'- caGCUG-GGCCgUCCaCUGgUCCGUCg -5'
9224 5' -60.3 NC_002512.2 + 169002 0.66 0.841071
Target:  5'- gGUCGcGCgCCGGCucGGcGAuCCGGGCGGg -3'
miRNA:   3'- -CAGC-UG-GGCCGu-CCaCU-GGUCCGUCg -5'
9224 5' -60.3 NC_002512.2 + 111893 0.66 0.8403
Target:  5'- cUCGAggcaauccagcacCCCGaGCAGcacGGCCAGGCGGg -3'
miRNA:   3'- cAGCU-------------GGGC-CGUCca-CUGGUCCGUCg -5'
9224 5' -60.3 NC_002512.2 + 105059 0.66 0.833282
Target:  5'- cUCGGCgaCGGCGGcGUGuCgGGGUAGUc -3'
miRNA:   3'- cAGCUGg-GCCGUC-CACuGgUCCGUCG- -5'
9224 5' -60.3 NC_002512.2 + 10684 0.66 0.833282
Target:  5'- -cCGGCCCGGCA-GUGcAgCGGGUacaggaAGCg -3'
miRNA:   3'- caGCUGGGCCGUcCAC-UgGUCCG------UCG- -5'
9224 5' -60.3 NC_002512.2 + 73176 0.66 0.833282
Target:  5'- --aGACCagcugCGGaCAGGUcccgcagaaguaGGCCAGGUGGCa -3'
miRNA:   3'- cagCUGG-----GCC-GUCCA------------CUGGUCCGUCG- -5'
9224 5' -60.3 NC_002512.2 + 129085 0.66 0.833282
Target:  5'- gGUCGACCCcgaGGaCGGGcGGCgucugcggCGGGCGGUc -3'
miRNA:   3'- -CAGCUGGG---CC-GUCCaCUG--------GUCCGUCG- -5'
9224 5' -60.3 NC_002512.2 + 92192 0.66 0.833282
Target:  5'- --gGACaaCCGGguGGUGGCCAa-CAGCu -3'
miRNA:   3'- cagCUG--GGCCguCCACUGGUccGUCG- -5'
9224 5' -60.3 NC_002512.2 + 117526 0.66 0.833282
Target:  5'- aUCGugCCca-AGGUGuCCGGGCuGGCg -3'
miRNA:   3'- cAGCugGGccgUCCACuGGUCCG-UCG- -5'
9224 5' -60.3 NC_002512.2 + 99968 0.66 0.825328
Target:  5'- aUCGGCCUGGCcccgcGGUGGCUGugucuguucucGGCGGg -3'
miRNA:   3'- cAGCUGGGCCGu----CCACUGGU-----------CCGUCg -5'
9224 5' -60.3 NC_002512.2 + 120781 0.66 0.825328
Target:  5'- -gCGGCCguCGGCGGGggcGGCgGgacGGCGGCg -3'
miRNA:   3'- caGCUGG--GCCGUCCa--CUGgU---CCGUCG- -5'
9224 5' -60.3 NC_002512.2 + 98784 0.66 0.825328
Target:  5'- -gUGGCCCGGCgcaccacgucAGGUacCCcGGCGGCc -3'
miRNA:   3'- caGCUGGGCCG----------UCCAcuGGuCCGUCG- -5'
9224 5' -60.3 NC_002512.2 + 113167 0.66 0.825328
Target:  5'- -gCGGCCgGGCGGGacgcGACCGGcGUcGCc -3'
miRNA:   3'- caGCUGGgCCGUCCa---CUGGUC-CGuCG- -5'
9224 5' -60.3 NC_002512.2 + 88980 0.66 0.825328
Target:  5'- gGUC--UCCGGCuucGUGGCCGGGgGGCc -3'
miRNA:   3'- -CAGcuGGGCCGuc-CACUGGUCCgUCG- -5'
9224 5' -60.3 NC_002512.2 + 5011 0.66 0.817217
Target:  5'- -gCGGCCggcgaGGCGGGaaACCAGGCcguGGCc -3'
miRNA:   3'- caGCUGGg----CCGUCCacUGGUCCG---UCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.