miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9228 3' -57.8 NC_002512.2 + 228384 0.66 0.93085
Target:  5'- aCGAggugUCCGGCGUGaUCUgUCCGGGGGa -3'
miRNA:   3'- aGCU----AGGCUGUACgGGAgGGGCUCUC- -5'
9228 3' -57.8 NC_002512.2 + 182154 0.66 0.93085
Target:  5'- aCGAUCUGuucCGaGCCCUCcuCCCGcGAGg -3'
miRNA:   3'- aGCUAGGCu--GUaCGGGAG--GGGCuCUC- -5'
9228 3' -57.8 NC_002512.2 + 113111 0.66 0.93085
Target:  5'- gCGAcgCUGACgucGUGCCuCUCCUCG-GAGa -3'
miRNA:   3'- aGCUa-GGCUG---UACGG-GAGGGGCuCUC- -5'
9228 3' -57.8 NC_002512.2 + 82202 0.66 0.925834
Target:  5'- gUCGggCCGGC--GUCCUCCCgGGGcGGg -3'
miRNA:   3'- -AGCuaGGCUGuaCGGGAGGGgCUC-UC- -5'
9228 3' -57.8 NC_002512.2 + 34974 0.66 0.925834
Target:  5'- -gGGUCCGGCuggGCCUcgcgUCCCGcGGAGg -3'
miRNA:   3'- agCUAGGCUGua-CGGGa---GGGGC-UCUC- -5'
9228 3' -57.8 NC_002512.2 + 84666 0.66 0.925834
Target:  5'- gUCGcgCCGGCAcugGUCCUCgucccgcagCCCGGGGu -3'
miRNA:   3'- -AGCuaGGCUGUa--CGGGAG---------GGGCUCUc -5'
9228 3' -57.8 NC_002512.2 + 124048 0.66 0.925834
Target:  5'- cUGAUCgaCGGCAcccucgucuggGCCCUgCCCGGGGGc -3'
miRNA:   3'- aGCUAG--GCUGUa----------CGGGAgGGGCUCUC- -5'
9228 3' -57.8 NC_002512.2 + 44021 0.66 0.925834
Target:  5'- gCGGcCCGAgGcGCCCUCCUCGAc-- -3'
miRNA:   3'- aGCUaGGCUgUaCGGGAGGGGCUcuc -5'
9228 3' -57.8 NC_002512.2 + 8002 0.66 0.925834
Target:  5'- cCGAUCUGggaGCAgaacucGCCCcacccgCUCCGAGAGg -3'
miRNA:   3'- aGCUAGGC---UGUa-----CGGGa-----GGGGCUCUC- -5'
9228 3' -57.8 NC_002512.2 + 189683 0.66 0.925834
Target:  5'- cUGGUaCCGGCG-GCCCUCgucgucgacgUCCGGGGGa -3'
miRNA:   3'- aGCUA-GGCUGUaCGGGAG----------GGGCUCUC- -5'
9228 3' -57.8 NC_002512.2 + 101206 0.66 0.925834
Target:  5'- cCGAUCaCGACG-GCCCcgUCCgCCGGGu- -3'
miRNA:   3'- aGCUAG-GCUGUaCGGG--AGG-GGCUCuc -5'
9228 3' -57.8 NC_002512.2 + 103637 0.66 0.925834
Target:  5'- gUCGGcuUCgGACAcccgGCCCUCCUCGGcGGc -3'
miRNA:   3'- -AGCU--AGgCUGUa---CGGGAGGGGCUcUC- -5'
9228 3' -57.8 NC_002512.2 + 92393 0.66 0.924287
Target:  5'- gUCGGUCCuGCAguuCCCgcugcuggauccgaUCCCCGAGGa -3'
miRNA:   3'- -AGCUAGGcUGUac-GGG--------------AGGGGCUCUc -5'
9228 3' -57.8 NC_002512.2 + 45660 0.66 0.9206
Target:  5'- cCGAcCCGACG-GUCgaCCCCaGAGAGa -3'
miRNA:   3'- aGCUaGGCUGUaCGGgaGGGG-CUCUC- -5'
9228 3' -57.8 NC_002512.2 + 96873 0.66 0.9206
Target:  5'- cUCGAUCgCGGC--GCaCUUCCCGGGGGc -3'
miRNA:   3'- -AGCUAG-GCUGuaCGgGAGGGGCUCUC- -5'
9228 3' -57.8 NC_002512.2 + 155913 0.66 0.9206
Target:  5'- cCGGcgCCGACGcGUCCUCCagcuuCGGGAGc -3'
miRNA:   3'- aGCUa-GGCUGUaCGGGAGGg----GCUCUC- -5'
9228 3' -57.8 NC_002512.2 + 154314 0.66 0.9206
Target:  5'- gUCGAcCgCGACGgcggcgGCCCcgCCCCGGcGAGc -3'
miRNA:   3'- -AGCUaG-GCUGUa-----CGGGa-GGGGCU-CUC- -5'
9228 3' -57.8 NC_002512.2 + 118941 0.66 0.9206
Target:  5'- aCGGcgCUGGCcccgGUGUUCUCCaCCGAGAGc -3'
miRNA:   3'- aGCUa-GGCUG----UACGGGAGG-GGCUCUC- -5'
9228 3' -57.8 NC_002512.2 + 191192 0.66 0.915149
Target:  5'- gCGAccgucuccUCCGuCGgcucgGUCUUCCCCGGGGGc -3'
miRNA:   3'- aGCU--------AGGCuGUa----CGGGAGGGGCUCUC- -5'
9228 3' -57.8 NC_002512.2 + 210253 0.66 0.915149
Target:  5'- aCGcgCUGGCGUGCgCCggCUCGGGGGa -3'
miRNA:   3'- aGCuaGGCUGUACG-GGagGGGCUCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.