miRNA display CGI


Results 1 - 20 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9228 5' -59.8 NC_002512.2 + 225836 0.66 0.892429
Target:  5'- -gCCGCGGGGGAu---CGAG-CCGc- -3'
miRNA:   3'- ggGGCGCCCCCUucuuGCUCuGGCcu -5'
9228 5' -59.8 NC_002512.2 + 36354 0.66 0.892429
Target:  5'- aCCCCGCGGacuccGucAGAACGAGugcACCGuGAc -3'
miRNA:   3'- -GGGGCGCCc----CcuUCUUGCUC---UGGC-CU- -5'
9228 5' -59.8 NC_002512.2 + 45523 0.66 0.892429
Target:  5'- gCCCGCGGcGGGcGGcGGCGGcGACUuGGGg -3'
miRNA:   3'- gGGGCGCC-CCCuUC-UUGCU-CUGG-CCU- -5'
9228 5' -59.8 NC_002512.2 + 186710 0.66 0.892429
Target:  5'- gUCUGCGGcGGGuuGGGCGAGGagUCGGc -3'
miRNA:   3'- gGGGCGCC-CCCuuCUUGCUCU--GGCCu -5'
9228 5' -59.8 NC_002512.2 + 202170 0.66 0.892429
Target:  5'- uUCCCGUGGucgugacGGGAGAACGcGcguuCCGGAu -3'
miRNA:   3'- -GGGGCGCCc------CCUUCUUGCuCu---GGCCU- -5'
9228 5' -59.8 NC_002512.2 + 223719 0.66 0.892429
Target:  5'- aCUCGCacGGGGAGGACGA--CCGGGa -3'
miRNA:   3'- gGGGCGccCCCUUCUUGCUcuGGCCU- -5'
9228 5' -59.8 NC_002512.2 + 107001 0.66 0.892429
Target:  5'- gCCCGgGccGGGGucGGcCGAGAgCCGGGc -3'
miRNA:   3'- gGGGCgC--CCCCuuCUuGCUCU-GGCCU- -5'
9228 5' -59.8 NC_002512.2 + 153319 0.66 0.892429
Target:  5'- uUCCCGCuGGGGuGGuuccGCuGGGCCGGu -3'
miRNA:   3'- -GGGGCGcCCCCuUCu---UGcUCUGGCCu -5'
9228 5' -59.8 NC_002512.2 + 193590 0.66 0.892429
Target:  5'- cCUCCGCGGGGacgacaGggGAgugacGCGGGGauGGGg -3'
miRNA:   3'- -GGGGCGCCCC------CuuCU-----UGCUCUggCCU- -5'
9228 5' -59.8 NC_002512.2 + 198150 0.66 0.892429
Target:  5'- gCCCCGCGcGGGccGGGuCGGcGCCGGc -3'
miRNA:   3'- -GGGGCGC-CCCcuUCUuGCUcUGGCCu -5'
9228 5' -59.8 NC_002512.2 + 96514 0.66 0.888664
Target:  5'- -aCCGcCGGaGGGAGccgcgccggcgguguGAGcCGGGGCCGGGg -3'
miRNA:   3'- ggGGC-GCC-CCCUU---------------CUU-GCUCUGGCCU- -5'
9228 5' -59.8 NC_002512.2 + 80773 0.66 0.886115
Target:  5'- uCCUCGCGGcucgaGGAGGAGCGGcGCgaGGAg -3'
miRNA:   3'- -GGGGCGCCc----CCUUCUUGCUcUGg-CCU- -5'
9228 5' -59.8 NC_002512.2 + 101768 0.66 0.886115
Target:  5'- gCUCCGuCGGcGGGAacccucGGGAgGAGAggcCCGGGu -3'
miRNA:   3'- -GGGGC-GCC-CCCU------UCUUgCUCU---GGCCU- -5'
9228 5' -59.8 NC_002512.2 + 133815 0.66 0.886115
Target:  5'- gCCgggUGCGGGGGGaagAGGAgGAGGgaggccucuCCGGAg -3'
miRNA:   3'- gGG---GCGCCCCCU---UCUUgCUCU---------GGCCU- -5'
9228 5' -59.8 NC_002512.2 + 15990 0.66 0.886115
Target:  5'- uCCCC-CGGGGaGcAGAacACGAGauaggucggccGCCGGGu -3'
miRNA:   3'- -GGGGcGCCCC-CuUCU--UGCUC-----------UGGCCU- -5'
9228 5' -59.8 NC_002512.2 + 127298 0.66 0.886115
Target:  5'- -gCCGacgaGGaGGaGAGGAugGAGACCaGGGc -3'
miRNA:   3'- ggGGCg---CC-CC-CUUCUugCUCUGG-CCU- -5'
9228 5' -59.8 NC_002512.2 + 190417 0.66 0.886115
Target:  5'- -gUCGcCGGGGGcugcGGGAGCGGgccgucaccGACCGGGa -3'
miRNA:   3'- ggGGC-GCCCCC----UUCUUGCU---------CUGGCCU- -5'
9228 5' -59.8 NC_002512.2 + 227894 0.66 0.886115
Target:  5'- --aCGCGGGcG-AGucCGAGGCCGGAg -3'
miRNA:   3'- gggGCGCCCcCuUCuuGCUCUGGCCU- -5'
9228 5' -59.8 NC_002512.2 + 229358 0.66 0.886115
Target:  5'- --gCGaaaGGGGGAAGGAagUGGGGCgGGAg -3'
miRNA:   3'- gggGCg--CCCCCUUCUU--GCUCUGgCCU- -5'
9228 5' -59.8 NC_002512.2 + 83208 0.66 0.886115
Target:  5'- gCgCGCGGggcGGGggGAGCGucGGucCCGGGg -3'
miRNA:   3'- gGgGCGCC---CCCuuCUUGC--UCu-GGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.