miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9229 3' -51.6 NC_002512.2 + 113717 0.66 0.997647
Target:  5'- -uGGGUCccGACGCGGGCGGcGAUcuGCGGg -3'
miRNA:   3'- guCCUAG--UUGUGCUCGUC-CUAc-UGCU- -5'
9229 3' -51.6 NC_002512.2 + 18715 0.66 0.997647
Target:  5'- gCAGGGcggCGACGCGcucgGGCAgcacgcccuGGAUGACGc -3'
miRNA:   3'- -GUCCUa--GUUGUGC----UCGU---------CCUACUGCu -5'
9229 3' -51.6 NC_002512.2 + 62589 0.66 0.997647
Target:  5'- aCGGGGUCGcggaACAgGucGCGGG-UGACGGc -3'
miRNA:   3'- -GUCCUAGU----UGUgCu-CGUCCuACUGCU- -5'
9229 3' -51.6 NC_002512.2 + 43088 0.66 0.997647
Target:  5'- gGGGcgCG--GCGAGCAGcGggGACGGc -3'
miRNA:   3'- gUCCuaGUugUGCUCGUC-CuaCUGCU- -5'
9229 3' -51.6 NC_002512.2 + 153239 0.66 0.997647
Target:  5'- uCGGGAgaaGAaGCGAGcCGGGA-GACGAu -3'
miRNA:   3'- -GUCCUag-UUgUGCUC-GUCCUaCUGCU- -5'
9229 3' -51.6 NC_002512.2 + 210407 0.66 0.997647
Target:  5'- uGGGG--AACGCG-GCGGGGaGGCGAg -3'
miRNA:   3'- gUCCUagUUGUGCuCGUCCUaCUGCU- -5'
9229 3' -51.6 NC_002512.2 + 168337 0.66 0.997607
Target:  5'- gCAGGAUCAGCAcgucgauccgcacCGAGguGGAcuccUGuCGc -3'
miRNA:   3'- -GUCCUAGUUGU-------------GCUCguCCU----ACuGCu -5'
9229 3' -51.6 NC_002512.2 + 91029 0.66 0.997221
Target:  5'- gCGGGAUacgggGACugGuGCGGGAgcggGugGGg -3'
miRNA:   3'- -GUCCUAg----UUGugCuCGUCCUa---CugCU- -5'
9229 3' -51.6 NC_002512.2 + 23991 0.66 0.997221
Target:  5'- -cGGGUCc-CGCGAGCGGGGacccGCGAc -3'
miRNA:   3'- guCCUAGuuGUGCUCGUCCUac--UGCU- -5'
9229 3' -51.6 NC_002512.2 + 72388 0.66 0.997221
Target:  5'- --uGAUgAGCGCcagguucuGCAGGAUGGCGAa -3'
miRNA:   3'- gucCUAgUUGUGcu------CGUCCUACUGCU- -5'
9229 3' -51.6 NC_002512.2 + 63021 0.66 0.997221
Target:  5'- cCAGGAgcUCG--GCGAGCAGGGagcgccgGACGu -3'
miRNA:   3'- -GUCCU--AGUugUGCUCGUCCUa------CUGCu -5'
9229 3' -51.6 NC_002512.2 + 92141 0.66 0.996732
Target:  5'- gCGGGcgcugCGGCGCGuGCAGGAccUGcCGAc -3'
miRNA:   3'- -GUCCua---GUUGUGCuCGUCCU--ACuGCU- -5'
9229 3' -51.6 NC_002512.2 + 132163 0.66 0.996732
Target:  5'- uCGGuGAgcgCGGCGucgUGAGCGGGAUaGACGGu -3'
miRNA:   3'- -GUC-CUa--GUUGU---GCUCGUCCUA-CUGCU- -5'
9229 3' -51.6 NC_002512.2 + 109776 0.66 0.996732
Target:  5'- aUAGcGGUCGaggcGCACGGGCgccaGGGGgagGGCGAa -3'
miRNA:   3'- -GUC-CUAGU----UGUGCUCG----UCCUa--CUGCU- -5'
9229 3' -51.6 NC_002512.2 + 7272 0.66 0.996732
Target:  5'- uCGGGAUCgGGCGCGAGgcccCGGGGgccgGACa- -3'
miRNA:   3'- -GUCCUAG-UUGUGCUC----GUCCUa---CUGcu -5'
9229 3' -51.6 NC_002512.2 + 6266 0.66 0.996732
Target:  5'- --cGAgCAGCACcAGCgacAGGAUGACGAa -3'
miRNA:   3'- gucCUaGUUGUGcUCG---UCCUACUGCU- -5'
9229 3' -51.6 NC_002512.2 + 127911 0.66 0.996732
Target:  5'- -cGGAUCGGcCACGAGCccGccGGCGGg -3'
miRNA:   3'- guCCUAGUU-GUGCUCGucCuaCUGCU- -5'
9229 3' -51.6 NC_002512.2 + 216491 0.66 0.996732
Target:  5'- gAGGcgCAGCGCGu-CAGGuagcgGACGAa -3'
miRNA:   3'- gUCCuaGUUGUGCucGUCCua---CUGCU- -5'
9229 3' -51.6 NC_002512.2 + 171664 0.66 0.996732
Target:  5'- gCGGGAcaUCuACGCGcGCGGGGUGcGCGc -3'
miRNA:   3'- -GUCCU--AGuUGUGCuCGUCCUAC-UGCu -5'
9229 3' -51.6 NC_002512.2 + 104132 0.66 0.996732
Target:  5'- -uGGAUCAcGgACGGGCuGGggGACGc -3'
miRNA:   3'- guCCUAGU-UgUGCUCGuCCuaCUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.