miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9229 5' -58 NC_002512.2 + 116721 0.66 0.91871
Target:  5'- -cCCCG-GCACGUcCGaCGUGGcCCGGc -3'
miRNA:   3'- caGGGCuCGUGCGaGC-GCAUCuGGUC- -5'
9229 5' -58 NC_002512.2 + 84173 0.66 0.91871
Target:  5'- gGUCCCGGucCAgGUUCgGCG-GGACCAGg -3'
miRNA:   3'- -CAGGGCUc-GUgCGAG-CGCaUCUGGUC- -5'
9229 5' -58 NC_002512.2 + 11266 0.66 0.91871
Target:  5'- gGUCCCGAcGCGCGUccuucgagucCGCGggcgAGACCc- -3'
miRNA:   3'- -CAGGGCU-CGUGCGa---------GCGCa---UCUGGuc -5'
9229 5' -58 NC_002512.2 + 80953 0.66 0.918164
Target:  5'- cGUCCCGGGuCugGCgCGUGUuguuguaGGGgCAGa -3'
miRNA:   3'- -CAGGGCUC-GugCGaGCGCA-------UCUgGUC- -5'
9229 5' -58 NC_002512.2 + 77483 0.66 0.915401
Target:  5'- aUCCCGcGCACGCUCGCccgcgucgAacaaugcgacggggcGACCGGu -3'
miRNA:   3'- cAGGGCuCGUGCGAGCGca------U---------------CUGGUC- -5'
9229 5' -58 NC_002512.2 + 19632 0.66 0.913151
Target:  5'- -cCCCGAGCcgGCGCacgccagCGCGUuaguaagacagGGAUCGGg -3'
miRNA:   3'- caGGGCUCG--UGCGa------GCGCA-----------UCUGGUC- -5'
9229 5' -58 NC_002512.2 + 116728 0.66 0.913151
Target:  5'- cGUCCCGcccGGC-CGCg-GCG-AGGCCGGc -3'
miRNA:   3'- -CAGGGC---UCGuGCGagCGCaUCUGGUC- -5'
9229 5' -58 NC_002512.2 + 14996 0.66 0.913151
Target:  5'- aGUCCCGcAGCuuGUcCGggcugaggcagaCGUAGGCCAGg -3'
miRNA:   3'- -CAGGGC-UCGugCGaGC------------GCAUCUGGUC- -5'
9229 5' -58 NC_002512.2 + 36903 0.66 0.913151
Target:  5'- gGUCCaGAGCGCGC-CG-GaGGACCAa -3'
miRNA:   3'- -CAGGgCUCGUGCGaGCgCaUCUGGUc -5'
9229 5' -58 NC_002512.2 + 180167 0.66 0.913151
Target:  5'- cGUCCCGAGCAgGUaCGaCGc-GugCAGg -3'
miRNA:   3'- -CAGGGCUCGUgCGaGC-GCauCugGUC- -5'
9229 5' -58 NC_002512.2 + 222570 0.66 0.913151
Target:  5'- cGUCCCGccgcGGCcCGCcgUCGCGgaggAGGCCu- -3'
miRNA:   3'- -CAGGGC----UCGuGCG--AGCGCa---UCUGGuc -5'
9229 5' -58 NC_002512.2 + 98221 0.66 0.913151
Target:  5'- uUCCCGAGCAgucuccgggUGCUCuCGUcgcGGACCc- -3'
miRNA:   3'- cAGGGCUCGU---------GCGAGcGCA---UCUGGuc -5'
9229 5' -58 NC_002512.2 + 190065 0.66 0.907373
Target:  5'- aUCCaCGAGCugGC-CGCG---GCCGGu -3'
miRNA:   3'- cAGG-GCUCGugCGaGCGCaucUGGUC- -5'
9229 5' -58 NC_002512.2 + 192554 0.66 0.907373
Target:  5'- uUCCCGAcaGCGCGUcCGUGgccgGGGCCu- -3'
miRNA:   3'- cAGGGCU--CGUGCGaGCGCa---UCUGGuc -5'
9229 5' -58 NC_002512.2 + 222767 0.66 0.906784
Target:  5'- cGUCUgggccaaCGAGCACgGCUaCGCG--GACCAGg -3'
miRNA:   3'- -CAGG-------GCUCGUG-CGA-GCGCauCUGGUC- -5'
9229 5' -58 NC_002512.2 + 75753 0.66 0.901379
Target:  5'- --aCCGAGCGCGCgucggagacCGCGgAGcCCGGg -3'
miRNA:   3'- cagGGCUCGUGCGa--------GCGCaUCuGGUC- -5'
9229 5' -58 NC_002512.2 + 10845 0.66 0.901379
Target:  5'- -cCCCGcGC-CGCggccgaCGaCGUAGACCAGc -3'
miRNA:   3'- caGGGCuCGuGCGa-----GC-GCAUCUGGUC- -5'
9229 5' -58 NC_002512.2 + 134866 0.66 0.901379
Target:  5'- cGUCUCGGGCgACGC-CGuCGgGGACCuGg -3'
miRNA:   3'- -CAGGGCUCG-UGCGaGC-GCaUCUGGuC- -5'
9229 5' -58 NC_002512.2 + 122733 0.66 0.900768
Target:  5'- cUCCCGGGCggaaacGCGCUgagggggCGCccGGGCCGGa -3'
miRNA:   3'- cAGGGCUCG------UGCGA-------GCGcaUCUGGUC- -5'
9229 5' -58 NC_002512.2 + 147875 0.66 0.895171
Target:  5'- -aCCCGGGCGacgGCUCGCcgcGACCGc -3'
miRNA:   3'- caGGGCUCGUg--CGAGCGcauCUGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.