miRNA display CGI


Results 1 - 20 of 224 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9233 3' -52.9 NC_002512.2 + 175570 0.66 0.995547
Target:  5'- -cGACUUGUAccGGCGGGucaccacgucgccguGCGGGuccuuCGGg -3'
miRNA:   3'- cuCUGGACAU--UUGCCCu--------------UGCCCu----GCC- -5'
9233 3' -52.9 NC_002512.2 + 193557 0.66 0.995481
Target:  5'- cGGGCgCUGUGGugGG--AgGGGugGGg -3'
miRNA:   3'- cUCUG-GACAUUugCCcuUgCCCugCC- -5'
9233 3' -52.9 NC_002512.2 + 87335 0.66 0.995481
Target:  5'- uGGACCgauccgcgGUGcGCGGucGACGGGGCGa -3'
miRNA:   3'- cUCUGGa-------CAUuUGCCc-UUGCCCUGCc -5'
9233 3' -52.9 NC_002512.2 + 128380 0.66 0.995481
Target:  5'- ---cCCUGUGcuacGACGGGGAgagcgacucgucCgGGGACGGg -3'
miRNA:   3'- cucuGGACAU----UUGCCCUU------------G-CCCUGCC- -5'
9233 3' -52.9 NC_002512.2 + 11683 0.66 0.995481
Target:  5'- -cGGCCcg-AGGCGGGGGCccgaGGGGCGa -3'
miRNA:   3'- cuCUGGacaUUUGCCCUUG----CCCUGCc -5'
9233 3' -52.9 NC_002512.2 + 35035 0.66 0.995481
Target:  5'- uGAGGCCgau---CGGGGuccgcACGGGcCGGg -3'
miRNA:   3'- -CUCUGGacauuuGCCCU-----UGCCCuGCC- -5'
9233 3' -52.9 NC_002512.2 + 201864 0.66 0.995481
Target:  5'- uGGGGCCUGcgGucCGaGGACGGcGGCGGc -3'
miRNA:   3'- -CUCUGGACa-UuuGCcCUUGCC-CUGCC- -5'
9233 3' -52.9 NC_002512.2 + 4623 0.66 0.994774
Target:  5'- -cGGCCUGUcgguggugaccuGGACGGuGGugGGGAUc- -3'
miRNA:   3'- cuCUGGACA------------UUUGCC-CUugCCCUGcc -5'
9233 3' -52.9 NC_002512.2 + 104607 0.66 0.994774
Target:  5'- -cGAac-GUGAGuacCGGGGAgGGGACGGg -3'
miRNA:   3'- cuCUggaCAUUU---GCCCUUgCCCUGCC- -5'
9233 3' -52.9 NC_002512.2 + 20631 0.66 0.994774
Target:  5'- gGAGGuCCgGUucgccGAGCGGGccCGGGACaGGa -3'
miRNA:   3'- -CUCU-GGaCA-----UUUGCCCuuGCCCUG-CC- -5'
9233 3' -52.9 NC_002512.2 + 188003 0.66 0.994774
Target:  5'- cGAGACUgUGgccgGAGCGGGGAUGauacaugaGACGGa -3'
miRNA:   3'- -CUCUGG-ACa---UUUGCCCUUGCc-------CUGCC- -5'
9233 3' -52.9 NC_002512.2 + 177149 0.66 0.994699
Target:  5'- gGAGACaaagcugcaauuuCUGauagGGGCGGGAACGGGuCa- -3'
miRNA:   3'- -CUCUG-------------GACa---UUUGCCCUUGCCCuGcc -5'
9233 3' -52.9 NC_002512.2 + 118939 0.66 0.994065
Target:  5'- -cGACCgcgagcucgagggGAGCGuGGGGCGGcGGCGGg -3'
miRNA:   3'- cuCUGGaca----------UUUGC-CCUUGCC-CUGCC- -5'
9233 3' -52.9 NC_002512.2 + 103328 0.66 0.993981
Target:  5'- cGAGGCCc--GGGCGGcGuagccCGGGGCGGa -3'
miRNA:   3'- -CUCUGGacaUUUGCC-Cuu---GCCCUGCC- -5'
9233 3' -52.9 NC_002512.2 + 167217 0.66 0.993981
Target:  5'- cGAG-CCUGUGu-UGGGggUGaGuGACGGu -3'
miRNA:   3'- -CUCuGGACAUuuGCCCuuGC-C-CUGCC- -5'
9233 3' -52.9 NC_002512.2 + 89580 0.66 0.993981
Target:  5'- --cGCCUGc-GGCGGGuGGCGGGAUGu -3'
miRNA:   3'- cucUGGACauUUGCCC-UUGCCCUGCc -5'
9233 3' -52.9 NC_002512.2 + 220658 0.66 0.993725
Target:  5'- cGAGcgccACCUGgcccgccgcgucguGCuGGGcGACGGGACGGa -3'
miRNA:   3'- -CUC----UGGACauu-----------UG-CCC-UUGCCCUGCC- -5'
9233 3' -52.9 NC_002512.2 + 31462 0.66 0.993461
Target:  5'- aAGACCUGcugggccaccucggAGACGGGcugaucagGACGaGGAUGGu -3'
miRNA:   3'- cUCUGGACa-------------UUUGCCC--------UUGC-CCUGCC- -5'
9233 3' -52.9 NC_002512.2 + 42555 0.66 0.993461
Target:  5'- aGGACaaacagGUGAcacggGCGGGcgccgcgaggcgagcGGCGGGGCGGa -3'
miRNA:   3'- cUCUGga----CAUU-----UGCCC---------------UUGCCCUGCC- -5'
9233 3' -52.9 NC_002512.2 + 160709 0.66 0.993094
Target:  5'- gGGGACUUG-GGGgGGGAcauCGGGGgGGa -3'
miRNA:   3'- -CUCUGGACaUUUgCCCUu--GCCCUgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.