miRNA display CGI


Results 1 - 20 of 615 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9233 5' -66.1 NC_002512.2 + 25847 0.65 0.61128
Target:  5'- aGACCGAaguagggcgagaguUCGCCGuCGgCCCGCacgaaGCCGa -3'
miRNA:   3'- -UUGGCU--------------GGCGGC-GCgGGGCGg----UGGCc -5'
9233 5' -66.1 NC_002512.2 + 202107 0.66 0.608505
Target:  5'- -uCCGACCGCgUccucgucagcuggugGCGCCggucucggCCGCCGCCGcGg -3'
miRNA:   3'- uuGGCUGGCG-G---------------CGCGG--------GGCGGUGGC-C- -5'
9233 5' -66.1 NC_002512.2 + 107673 0.66 0.608505
Target:  5'- cACCGucGCCGuccccuucuggaucuCCGC-CUCCGCCACCGc -3'
miRNA:   3'- uUGGC--UGGC---------------GGCGcGGGGCGGUGGCc -5'
9233 5' -66.1 NC_002512.2 + 126923 0.66 0.604806
Target:  5'- aGGCCGGgcuggcgauacCCGcCCGCGCCCCGgucgacCCuCUGGc -3'
miRNA:   3'- -UUGGCU-----------GGC-GGCGCGGGGC------GGuGGCC- -5'
9233 5' -66.1 NC_002512.2 + 103532 0.66 0.604806
Target:  5'- gGACCGugaaCGCgucgUGCGCgCCCGUC-CCGGa -3'
miRNA:   3'- -UUGGCug--GCG----GCGCG-GGGCGGuGGCC- -5'
9233 5' -66.1 NC_002512.2 + 81422 0.66 0.604806
Target:  5'- -cCCG-CCGUCGCgGCUCCGucCCGCgGGg -3'
miRNA:   3'- uuGGCuGGCGGCG-CGGGGC--GGUGgCC- -5'
9233 5' -66.1 NC_002512.2 + 129824 0.66 0.604806
Target:  5'- -cCCGGcCCGCgGC-CCCCGUCGCgaUGGa -3'
miRNA:   3'- uuGGCU-GGCGgCGcGGGGCGGUG--GCC- -5'
9233 5' -66.1 NC_002512.2 + 64483 0.66 0.604806
Target:  5'- cGCCGGCCcuCCuggaccaugaGCGCCCCGacCUugCGGg -3'
miRNA:   3'- uUGGCUGGc-GG----------CGCGGGGC--GGugGCC- -5'
9233 5' -66.1 NC_002512.2 + 8439 0.66 0.604806
Target:  5'- -gUCGGaCGaCCGCGCCCCGgCCGCgGu -3'
miRNA:   3'- uuGGCUgGC-GGCGCGGGGC-GGUGgCc -5'
9233 5' -66.1 NC_002512.2 + 62143 0.66 0.604806
Target:  5'- cGCCGACgC-CCGgcagcuccuCGCCCCGCUcgacgagagACCGGu -3'
miRNA:   3'- uUGGCUG-GcGGC---------GCGGGGCGG---------UGGCC- -5'
9233 5' -66.1 NC_002512.2 + 112862 0.66 0.604806
Target:  5'- cAGCuCGAUgGCCGCGuCCuCCGgC-CCGGc -3'
miRNA:   3'- -UUG-GCUGgCGGCGC-GG-GGCgGuGGCC- -5'
9233 5' -66.1 NC_002512.2 + 124269 0.66 0.604806
Target:  5'- aGACCGACgacgGCCgGUGCCUCGgCGCCu- -3'
miRNA:   3'- -UUGGCUGg---CGG-CGCGGGGCgGUGGcc -5'
9233 5' -66.1 NC_002512.2 + 196190 0.66 0.604806
Target:  5'- gGGgCGACgGCCGgGUCCCuggcgaGCCuCCGGc -3'
miRNA:   3'- -UUgGCUGgCGGCgCGGGG------CGGuGGCC- -5'
9233 5' -66.1 NC_002512.2 + 213218 0.66 0.604806
Target:  5'- ---gGACCGCCGgGUCguggCCGCCaacggcgccgGCCGGa -3'
miRNA:   3'- uuggCUGGCGGCgCGG----GGCGG----------UGGCC- -5'
9233 5' -66.1 NC_002512.2 + 108403 0.66 0.604806
Target:  5'- cGCCGauGCUGCUGCugcucgucuGCgCCGCCcgggGCCGGg -3'
miRNA:   3'- uUGGC--UGGCGGCG---------CGgGGCGG----UGGCC- -5'
9233 5' -66.1 NC_002512.2 + 148958 0.66 0.604806
Target:  5'- cACCuACCGCCgggaggGCGCCCgCGCgACCc- -3'
miRNA:   3'- uUGGcUGGCGG------CGCGGG-GCGgUGGcc -5'
9233 5' -66.1 NC_002512.2 + 215553 0.66 0.604806
Target:  5'- uGCUGGCCGUCgGCGCCUCGgCGUCGu -3'
miRNA:   3'- uUGGCUGGCGG-CGCGGGGCgGUGGCc -5'
9233 5' -66.1 NC_002512.2 + 102899 0.66 0.604806
Target:  5'- cACCGugCGCCugGCGCggucgaCgGCCACgGGc -3'
miRNA:   3'- uUGGCugGCGG--CGCGg-----GgCGGUGgCC- -5'
9233 5' -66.1 NC_002512.2 + 127923 0.66 0.604806
Target:  5'- gAGCCcGCCGgCGgGCCCgcggGCCACCa- -3'
miRNA:   3'- -UUGGcUGGCgGCgCGGGg---CGGUGGcc -5'
9233 5' -66.1 NC_002512.2 + 159187 0.66 0.604806
Target:  5'- -cCCGucCCcCCGUcCCCCGCCcgGCCGGu -3'
miRNA:   3'- uuGGCu-GGcGGCGcGGGGCGG--UGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.