miRNA display CGI


Results 21 - 40 of 453 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9234 3' -66.7 NC_002512.2 + 6093 0.68 0.461003
Target:  5'- gUCGCCGCCGaCGUCCccgGCGacGUCCGGu -3'
miRNA:   3'- -GGCGGCGGCcGCGGGaa-CGC--CGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 6207 0.73 0.212276
Target:  5'- gCCGuuGUCGGCGCCCUUGgagGaGCCCc- -3'
miRNA:   3'- -GGCggCGGCCGCGGGAACg--C-CGGGcu -5'
9234 3' -66.7 NC_002512.2 + 7424 0.72 0.275493
Target:  5'- aCCGCgaggGCCGGCGCgagguuggCC--GCGGCCCGGg -3'
miRNA:   3'- -GGCGg---CGGCCGCG--------GGaaCGCCGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 7914 0.66 0.556956
Target:  5'- aUGUCGCCGGuCGaacgaCCUccgguuucguUGCGGCCgGGc -3'
miRNA:   3'- gGCGGCGGCC-GCg----GGA----------ACGCCGGgCU- -5'
9234 3' -66.7 NC_002512.2 + 7981 0.66 0.566009
Target:  5'- aUCGgCGCUGGCGCCCgauc--CCCGAu -3'
miRNA:   3'- -GGCgGCGGCCGCGGGaacgccGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 8429 0.71 0.318882
Target:  5'- aCCGCgGCCGGUcggacgaccgcGCCCcggccGCGGUCCGc -3'
miRNA:   3'- -GGCGgCGGCCG-----------CGGGaa---CGCCGGGCu -5'
9234 3' -66.7 NC_002512.2 + 8489 0.71 0.305982
Target:  5'- cCCGCCGCCucccCGCCCgcGCcccGCCCGAg -3'
miRNA:   3'- -GGCGGCGGcc--GCGGGaaCGc--CGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 8822 0.68 0.469386
Target:  5'- uCCGCCGCCGGaGCUUggGCcagacgGGCUCGc -3'
miRNA:   3'- -GGCGGCGGCCgCGGGaaCG------CCGGGCu -5'
9234 3' -66.7 NC_002512.2 + 9579 0.7 0.352897
Target:  5'- cCCgGCCcCCGGCcCCCcgGCGGCUCGGc -3'
miRNA:   3'- -GG-CGGcGGCCGcGGGaaCGCCGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 9686 0.67 0.503662
Target:  5'- gCCGCCGUCGG-GCCCcggcgGgGGUUCGc -3'
miRNA:   3'- -GGCGGCGGCCgCGGGaa---CgCCGGGCu -5'
9234 3' -66.7 NC_002512.2 + 10470 0.72 0.25289
Target:  5'- gCCGCCGCCccgggcgugGGCGUCgcgGCGGgCCGAc -3'
miRNA:   3'- -GGCGGCGG---------CCGCGGgaaCGCCgGGCU- -5'
9234 3' -66.7 NC_002512.2 + 10776 0.66 0.5751
Target:  5'- cCCGCCGCgguaGGCGUaguaGCGG-CCGAa -3'
miRNA:   3'- -GGCGGCGg---CCGCGggaaCGCCgGGCU- -5'
9234 3' -66.7 NC_002512.2 + 10951 0.71 0.299683
Target:  5'- aCGaggaCGCCGGCGCCCUcgggccaggcaGCGGCaCGAg -3'
miRNA:   3'- gGCg---GCGGCCGCGGGAa----------CGCCGgGCU- -5'
9234 3' -66.7 NC_002512.2 + 11663 0.75 0.177399
Target:  5'- aUCGgCGCCGcG-GCCCgccGCGGCCCGAg -3'
miRNA:   3'- -GGCgGCGGC-CgCGGGaa-CGCCGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 12103 0.69 0.41246
Target:  5'- uCCGCCaGCCGGCcgcgaCCCcgGCgacggggacgGGCCCGGg -3'
miRNA:   3'- -GGCGG-CGGCCGc----GGGaaCG----------CCGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 12312 0.67 0.523856
Target:  5'- gCGCCGCCGGaccggcuCGCCgUcGCGaacgcgaacaacaacGCCCGGu -3'
miRNA:   3'- gGCGGCGGCC-------GCGGgAaCGC---------------CGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 12773 0.72 0.247483
Target:  5'- gCCGCCGCaggacucggCGGCGCCCccGCuGCCCc- -3'
miRNA:   3'- -GGCGGCG---------GCCGCGGGaaCGcCGGGcu -5'
9234 3' -66.7 NC_002512.2 + 14128 0.69 0.396994
Target:  5'- gCUGCCGCUGGagaaacaGCCCUUG-GGCagCGGg -3'
miRNA:   3'- -GGCGGCGGCCg------CGGGAACgCCGg-GCU- -5'
9234 3' -66.7 NC_002512.2 + 15227 0.68 0.420331
Target:  5'- gUCGCCGa-GGCGCCgggaggagagaCUgcgagGCGGCCCGc -3'
miRNA:   3'- -GGCGGCggCCGCGG-----------GAa----CGCCGGGCu -5'
9234 3' -66.7 NC_002512.2 + 15568 0.67 0.521204
Target:  5'- -aGUCGUCGGCcuGCUCgUGCGGCacgCCGAa -3'
miRNA:   3'- ggCGGCGGCCG--CGGGaACGCCG---GGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.