miRNA display CGI


Results 41 - 60 of 453 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9234 3' -66.7 NC_002512.2 + 172886 0.66 0.566009
Target:  5'- aCCGCCGacCCGGcCGCCCacgGCuGUCCc- -3'
miRNA:   3'- -GGCGGC--GGCC-GCGGGaa-CGcCGGGcu -5'
9234 3' -66.7 NC_002512.2 + 215060 0.66 0.566009
Target:  5'- aCCGUCGUCGGCGgcgucuaCCgcgucgGCGGgaCCGAg -3'
miRNA:   3'- -GGCGGCGGCCGCg------GGaa----CGCCg-GGCU- -5'
9234 3' -66.7 NC_002512.2 + 160749 0.66 0.566009
Target:  5'- aCGgCGCCGGC-CCCggGCacggaGGuCCCGGa -3'
miRNA:   3'- gGCgGCGGCCGcGGGaaCG-----CC-GGGCU- -5'
9234 3' -66.7 NC_002512.2 + 148089 0.66 0.566009
Target:  5'- uCCGuCCcCCGGCGgCggcgGCGGCgCCGAa -3'
miRNA:   3'- -GGC-GGcGGCCGCgGgaa-CGCCG-GGCU- -5'
9234 3' -66.7 NC_002512.2 + 123574 0.66 0.566009
Target:  5'- gCCGCCGaaGGCGC---UGCGgGUCUGAg -3'
miRNA:   3'- -GGCGGCggCCGCGggaACGC-CGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 98120 0.66 0.566009
Target:  5'- cCCGCuUGCCGGgGCgCUggucgucGCGGCCg-- -3'
miRNA:   3'- -GGCG-GCGGCCgCGgGAa------CGCCGGgcu -5'
9234 3' -66.7 NC_002512.2 + 184545 0.66 0.584225
Target:  5'- -aGCCGgCGGCGCgggCCggcgGaCGGCCCu- -3'
miRNA:   3'- ggCGGCgGCCGCG---GGaa--C-GCCGGGcu -5'
9234 3' -66.7 NC_002512.2 + 213003 0.66 0.566009
Target:  5'- gCgGCCGUCGG-GCCC--GgGGCCCu- -3'
miRNA:   3'- -GgCGGCGGCCgCGGGaaCgCCGGGcu -5'
9234 3' -66.7 NC_002512.2 + 98357 0.66 0.566009
Target:  5'- -gGCCGuuGGCGUCCUUcacgGCGucuCCCGu -3'
miRNA:   3'- ggCGGCggCCGCGGGAA----CGCc--GGGCu -5'
9234 3' -66.7 NC_002512.2 + 96657 0.66 0.565102
Target:  5'- gCCGCCGCCcuccCGUCCUcgcuggGCGGacgacguCCCGAa -3'
miRNA:   3'- -GGCGGCGGcc--GCGGGAa-----CGCC-------GGGCU- -5'
9234 3' -66.7 NC_002512.2 + 90650 0.66 0.563289
Target:  5'- gCCGCgGCCgcggucucggagucGGCGgCCgcgGCGGCCaGGg -3'
miRNA:   3'- -GGCGgCGG--------------CCGCgGGaa-CGCCGGgCU- -5'
9234 3' -66.7 NC_002512.2 + 192597 0.66 0.560573
Target:  5'- cCCGCUGCugCGGCGCgCgcggcgggcgacgGCGGCCUc- -3'
miRNA:   3'- -GGCGGCG--GCCGCGgGaa-----------CGCCGGGcu -5'
9234 3' -66.7 NC_002512.2 + 187310 0.66 0.556956
Target:  5'- cCCGCCGCucgccucgCGGCGCCC-----GCCCGu -3'
miRNA:   3'- -GGCGGCG--------GCCGCGGGaacgcCGGGCu -5'
9234 3' -66.7 NC_002512.2 + 7914 0.66 0.556956
Target:  5'- aUGUCGCCGGuCGaacgaCCUccgguuucguUGCGGCCgGGc -3'
miRNA:   3'- gGCGGCGGCC-GCg----GGA----------ACGCCGGgCU- -5'
9234 3' -66.7 NC_002512.2 + 181387 0.66 0.556956
Target:  5'- gCGUCGUCGuGCGCCCUgGCcuccGCCgGGg -3'
miRNA:   3'- gGCGGCGGC-CGCGGGAaCGc---CGGgCU- -5'
9234 3' -66.7 NC_002512.2 + 168714 0.66 0.556956
Target:  5'- aCGCCGUCGGggagcucgUGCCCUccuUGCaGGCCg-- -3'
miRNA:   3'- gGCGGCGGCC--------GCGGGA---ACG-CCGGgcu -5'
9234 3' -66.7 NC_002512.2 + 92715 0.66 0.556956
Target:  5'- aCGCCGUaCGGaCGUCCgggggGCGcGCUCGGu -3'
miRNA:   3'- gGCGGCG-GCC-GCGGGaa---CGC-CGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 218408 0.66 0.556956
Target:  5'- uCCGUCGUCGuCGUCCUcGCGGUCUc- -3'
miRNA:   3'- -GGCGGCGGCcGCGGGAaCGCCGGGcu -5'
9234 3' -66.7 NC_002512.2 + 146788 0.66 0.556956
Target:  5'- gCCGgaCCGCCGGa-CCCggagGaGGCCCGGg -3'
miRNA:   3'- -GGC--GGCGGCCgcGGGaa--CgCCGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 206544 0.66 0.55515
Target:  5'- cUCGCCGCacucguacacCGCCg--GCGGCCCGGg -3'
miRNA:   3'- -GGCGGCGgcc-------GCGGgaaCGCCGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.