miRNA display CGI


Results 41 - 60 of 453 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9234 3' -66.7 NC_002512.2 + 104272 0.74 0.18561
Target:  5'- gUCGCCGCCGGCGUCUUUcuCGcGUCCGGc -3'
miRNA:   3'- -GGCGGCGGCCGCGGGAAc-GC-CGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 88591 0.74 0.181463
Target:  5'- gUCGCCGCCGGUGCCgCcgUGCGcGCggCCGGc -3'
miRNA:   3'- -GGCGGCGGCCGCGG-Ga-ACGC-CG--GGCU- -5'
9234 3' -66.7 NC_002512.2 + 147854 0.73 0.212277
Target:  5'- aCCGCCGCCGGCGCgaccccgacCCggGCgacGGCUCGc -3'
miRNA:   3'- -GGCGGCGGCCGCG---------GGaaCG---CCGGGCu -5'
9234 3' -66.7 NC_002512.2 + 120889 0.73 0.213693
Target:  5'- aCGCCGCCGGCGCCgacgagcagguacaCGGCCCu- -3'
miRNA:   3'- gGCGGCGGCCGCGGgaac----------GCCGGGcu -5'
9234 3' -66.7 NC_002512.2 + 109008 0.73 0.242172
Target:  5'- gCGCCGgCGGCGUCgUccUGCGGaCCCGc -3'
miRNA:   3'- gGCGGCgGCCGCGGgA--ACGCC-GGGCu -5'
9234 3' -66.7 NC_002512.2 + 3161 0.73 0.231835
Target:  5'- cCCGCCGUCGuCGCCC--GCGGCCUc- -3'
miRNA:   3'- -GGCGGCGGCcGCGGGaaCGCCGGGcu -5'
9234 3' -66.7 NC_002512.2 + 184478 0.73 0.221873
Target:  5'- gCCGCCGUCGaGCGCCCgcacgaGCgacagucccGGCCCGc -3'
miRNA:   3'- -GGCGGCGGC-CGCGGGaa----CG---------CCGGGCu -5'
9234 3' -66.7 NC_002512.2 + 92636 0.73 0.242172
Target:  5'- gCgGCCGCCGGCGCCgggacccgcGCGGaUCCGGg -3'
miRNA:   3'- -GgCGGCGGCCGCGGgaa------CGCC-GGGCU- -5'
9234 3' -66.7 NC_002512.2 + 112786 0.73 0.236957
Target:  5'- gCCGCUguGCCGG-GUCCaggGCGGCCCGc -3'
miRNA:   3'- -GGCGG--CGGCCgCGGGaa-CGCCGGGCu -5'
9234 3' -66.7 NC_002512.2 + 6207 0.73 0.212276
Target:  5'- gCCGuuGUCGGCGCCCUUGgagGaGCCCc- -3'
miRNA:   3'- -GGCggCGGCCGCGGGAACg--C-CGGGcu -5'
9234 3' -66.7 NC_002512.2 + 16248 0.73 0.221872
Target:  5'- gUCGUCGCCGuCGCCCgcgGCGGCCa-- -3'
miRNA:   3'- -GGCGGCGGCcGCGGGaa-CGCCGGgcu -5'
9234 3' -66.7 NC_002512.2 + 72498 0.73 0.212276
Target:  5'- gUGCaGCCGGCGaucucguccgguCCCUgcccgGCGGCCCGGa -3'
miRNA:   3'- gGCGgCGGCCGC------------GGGAa----CGCCGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 94588 0.73 0.242172
Target:  5'- aCCGCCGgacaggcgaaCUGGgGCCCgaagcagGCGGCCCa- -3'
miRNA:   3'- -GGCGGC----------GGCCgCGGGaa-----CGCCGGGcu -5'
9234 3' -66.7 NC_002512.2 + 184439 0.73 0.217029
Target:  5'- gCCGCCGCCGGCGUcggacagggagUCgccGCGGCCgGc -3'
miRNA:   3'- -GGCGGCGGCCGCG-----------GGaa-CGCCGGgCu -5'
9234 3' -66.7 NC_002512.2 + 26735 0.73 0.212276
Target:  5'- gCGUCGCCGGCGCCgCUguacgccacggUGaUGGCCCa- -3'
miRNA:   3'- gGCGGCGGCCGCGG-GA-----------AC-GCCGGGcu -5'
9234 3' -66.7 NC_002512.2 + 218808 0.73 0.242172
Target:  5'- aCCGCCGuCCGcuccgucuCGCCCUccGCGGCCCu- -3'
miRNA:   3'- -GGCGGC-GGCc-------GCGGGAa-CGCCGGGcu -5'
9234 3' -66.7 NC_002512.2 + 188648 0.73 0.231835
Target:  5'- gCGCCGgCGGCGgCg--GCGGCCCGu -3'
miRNA:   3'- gGCGGCgGCCGCgGgaaCGCCGGGCu -5'
9234 3' -66.7 NC_002512.2 + 133579 0.73 0.231835
Target:  5'- aUCGaCCGCCGGgGaCCCgaGCGGgCCGGc -3'
miRNA:   3'- -GGC-GGCGGCCgC-GGGaaCGCCgGGCU- -5'
9234 3' -66.7 NC_002512.2 + 103122 0.73 0.217029
Target:  5'- gCCGCCGCCGccGCGCCCcgagGCGuCUCGGg -3'
miRNA:   3'- -GGCGGCGGC--CGCGGGaa--CGCcGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 172704 0.73 0.212277
Target:  5'- aCCGCUGCCgcgaGGUGCCC-UGCGGCaacCCGc -3'
miRNA:   3'- -GGCGGCGG----CCGCGGGaACGCCG---GGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.