Results 81 - 87 of 87 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 9234 | 5' | -55.1 | NC_002512.2 | + | 106469 | 0.66 | 0.970437 |
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Target: 5'- --aCggGCgGCGGGAcCUCGACcGCCUc -3' miRNA: 3'- gaaGaaCGgCGUCCU-GAGCUGcUGGA- -5' |
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| 9234 | 5' | -55.1 | NC_002512.2 | + | 21776 | 0.66 | 0.970437 |
|
Target: 5'- -----gGCCGCGucucuGGuuUCGACGACCa -3' miRNA: 3'- gaagaaCGGCGU-----CCugAGCUGCUGGa -5' |
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| 9234 | 5' | -55.1 | NC_002512.2 | + | 98616 | 0.66 | 0.970437 |
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Target: 5'- -cUCUU-CCGCAGGAUggccgUGACGAgCg -3' miRNA: 3'- gaAGAAcGGCGUCCUGa----GCUGCUgGa -5' |
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| 9234 | 5' | -55.1 | NC_002512.2 | + | 223792 | 0.66 | 0.970437 |
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Target: 5'- -----cGUCGCcgGGGACgucggCGGCGACCg -3' miRNA: 3'- gaagaaCGGCG--UCCUGa----GCUGCUGGa -5' |
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| 9234 | 5' | -55.1 | NC_002512.2 | + | 145931 | 0.66 | 0.973175 |
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Target: 5'- -----cGCCGcCGGGACUUcuuCGACCUg -3' miRNA: 3'- gaagaaCGGC-GUCCUGAGcu-GCUGGA- -5' |
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| 9234 | 5' | -55.1 | NC_002512.2 | + | 219126 | 0.66 | 0.973175 |
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Target: 5'- -----cGCgGCGGGGC-CGACGACg- -3' miRNA: 3'- gaagaaCGgCGUCCUGaGCUGCUGga -5' |
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| 9234 | 5' | -55.1 | NC_002512.2 | + | 196675 | 0.66 | 0.975724 |
|
Target: 5'- -cUCUgacUGCCgGCGGGACgagCGGC-ACCg -3' miRNA: 3'- gaAGA---ACGG-CGUCCUGa--GCUGcUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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