miRNA display CGI

Results 81 - 87 of 87 are showing below:
Show page: 1 2 3 4 5

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
9234	5'	-55.1	NC_002512.2	+	101698	0.68	0.936458
	Target:  5'- -gUCccGCCgGCGGcccGCUCGGCGACCUc -3' miRNA:   3'- gaAGaaCGG-CGUCc--UGAGCUGCUGGA- -5'
9234	5'	-55.1	NC_002512.2	+	188634	0.68	0.931576
	Target:  5'- -cUCggGCCGCaAGGGCgccggcggcggCGGCGGCCc -3' miRNA:   3'- gaAGaaCGGCG-UCCUGa----------GCUGCUGGa -5'
9234	5'	-55.1	NC_002512.2	+	158978	0.68	0.926466
	Target:  5'- gUUCggcgGCCacgGCGGGGCggaggCGGCGGCCc -3' miRNA:   3'- gAAGaa--CGG---CGUCCUGa----GCUGCUGGa -5'
9234	5'	-55.1	NC_002512.2	+	98166	0.68	0.921127
	Target:  5'- -----cGCCGCGgucuGGACgggcgCGGCGACCg -3' miRNA:   3'- gaagaaCGGCGU----CCUGa----GCUGCUGGa -5'
9234	5'	-55.1	NC_002512.2	+	94516	0.68	0.92058
	Target:  5'- uCUUCgaacccGCC-CAGGACgaagcggUCGACGGCCa -3' miRNA:   3'- -GAAGaa----CGGcGUCCUG-------AGCUGCUGGa -5'
9234	5'	-55.1	NC_002512.2	+	225730	0.68	0.915559
	Target:  5'- -----aGCCGCGGcGACUCGcucagucggggcGCGGCCg -3' miRNA:   3'- gaagaaCGGCGUC-CUGAGC------------UGCUGGa -5'
9234	5'	-55.1	NC_002512.2	+	146177	0.77	0.500968
	Target:  5'- ----cUGCCGCGcggcacggucgcccuGGGCUCGACGACCg -3' miRNA:   3'- gaagaACGGCGU---------------CCUGAGCUGCUGGa -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home