Results 21 - 40 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9234 | 5' | -55.1 | NC_002512.2 | + | 148756 | 0.67 | 0.949742 |
Target: 5'- cCUUCUUcgUGCGcGACuUCGACGACCUg -3' miRNA: 3'- -GAAGAAcgGCGUcCUG-AGCUGCUGGA- -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 219560 | 0.66 | 0.975724 |
Target: 5'- -gUCUUcGCCG-GGGACgugugCGACGGCUc -3' miRNA: 3'- gaAGAA-CGGCgUCCUGa----GCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 121983 | 0.66 | 0.974727 |
Target: 5'- -----cGCCgGCGGGACgagaggaagaucgCGGCGGCCa -3' miRNA: 3'- gaagaaCGG-CGUCCUGa------------GCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 194899 | 0.66 | 0.973175 |
Target: 5'- cCUUCUccuCCGCGGGACgCGA-GGCCc -3' miRNA: 3'- -GAAGAac-GGCGUCCUGaGCUgCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 34623 | 0.66 | 0.973175 |
Target: 5'- aCUUCgagUGucCCGCcuGugUCGACGAUCa -3' miRNA: 3'- -GAAGa--AC--GGCGucCugAGCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 219126 | 0.66 | 0.973175 |
Target: 5'- -----cGCgGCGGGGC-CGACGACg- -3' miRNA: 3'- gaagaaCGgCGUCCUGaGCUGCUGga -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 145931 | 0.66 | 0.973175 |
Target: 5'- -----cGCCGcCGGGACUUcuuCGACCUg -3' miRNA: 3'- gaagaaCGGC-GUCCUGAGcu-GCUGGA- -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 223792 | 0.66 | 0.970437 |
Target: 5'- -----cGUCGCcgGGGACgucggCGGCGACCg -3' miRNA: 3'- gaagaaCGGCG--UCCUGa----GCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 98616 | 0.66 | 0.970437 |
Target: 5'- -cUCUU-CCGCAGGAUggccgUGACGAgCg -3' miRNA: 3'- gaAGAAcGGCGUCCUGa----GCUGCUgGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 21776 | 0.66 | 0.970437 |
Target: 5'- -----gGCCGCGucucuGGuuUCGACGACCa -3' miRNA: 3'- gaagaaCGGCGU-----CCugAGCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 214310 | 0.66 | 0.970437 |
Target: 5'- uCUUCggcgUGCCGCAcgagcaGGC-CGACGACUc -3' miRNA: 3'- -GAAGa---ACGGCGUc-----CUGaGCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 106469 | 0.66 | 0.970437 |
Target: 5'- --aCggGCgGCGGGAcCUCGACcGCCUc -3' miRNA: 3'- gaaGaaCGgCGUCCU-GAGCUGcUGGA- -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 202459 | 0.66 | 0.967505 |
Target: 5'- cCUUUUUuCCGCGGacGCUCGGCGACg- -3' miRNA: 3'- -GAAGAAcGGCGUCc-UGAGCUGCUGga -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 70643 | 0.66 | 0.967505 |
Target: 5'- ----gUGCCGuCAGGACcauUC-ACGACCUa -3' miRNA: 3'- gaagaACGGC-GUCCUG---AGcUGCUGGA- -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 213632 | 0.66 | 0.964373 |
Target: 5'- -cUCUUgGCCGCcgcGGGCgacggCGACGACg- -3' miRNA: 3'- gaAGAA-CGGCGu--CCUGa----GCUGCUGga -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 92535 | 0.66 | 0.964373 |
Target: 5'- -aUCUacccgGCCGCGGcGGCcgCGGCGACg- -3' miRNA: 3'- gaAGAa----CGGCGUC-CUGa-GCUGCUGga -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 219425 | 0.66 | 0.961035 |
Target: 5'- -----cGCC-CGGGGCggCGGCGGCCUc -3' miRNA: 3'- gaagaaCGGcGUCCUGa-GCUGCUGGA- -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 144621 | 0.66 | 0.961035 |
Target: 5'- -----cGCCGCGcuGGACgUGGCGGCCa -3' miRNA: 3'- gaagaaCGGCGU--CCUGaGCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 196386 | 0.67 | 0.957487 |
Target: 5'- aCUUCgggacGCCGCgggucuggcgcgGGGACgcggggggCGGCGGCCg -3' miRNA: 3'- -GAAGaa---CGGCG------------UCCUGa-------GCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 74642 | 0.67 | 0.949742 |
Target: 5'- -gUCgacGCCGCGacGGGCggGACGGCCg -3' miRNA: 3'- gaAGaa-CGGCGU--CCUGagCUGCUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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