miRNA display CGI


Results 41 - 60 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9235 3' -59 NC_002512.2 + 74748 0.67 0.828501
Target:  5'- aCAccGGCUuguUCCCCGGacgaCCCAGGAGCu -3'
miRNA:   3'- -GUacCUGG---AGGGGCUg---GGGUCCUUGu -5'
9235 3' -59 NC_002512.2 + 95319 0.67 0.826087
Target:  5'- --cGGGCCgCCguaccggaacauguUCGGCCCCAGGAAg- -3'
miRNA:   3'- guaCCUGGaGG--------------GGCUGGGGUCCUUgu -5'
9235 3' -59 NC_002512.2 + 208712 0.67 0.8204
Target:  5'- --cGGGgCUCgCCGACCagauCGGGAGCGc -3'
miRNA:   3'- guaCCUgGAGgGGCUGGg---GUCCUUGU- -5'
9235 3' -59 NC_002512.2 + 132614 0.67 0.8204
Target:  5'- ---cGGCCUCCCCGAugcguUCCC-GGAACc -3'
miRNA:   3'- guacCUGGAGGGGCU-----GGGGuCCUUGu -5'
9235 3' -59 NC_002512.2 + 106217 0.67 0.8204
Target:  5'- --cGGACCgcuUCCCCGAgCCCGGccGCc -3'
miRNA:   3'- guaCCUGG---AGGGGCUgGGGUCcuUGu -5'
9235 3' -59 NC_002512.2 + 143370 0.67 0.8204
Target:  5'- --gGGGCCUCCCCG-CUCaAGGAcgGCu -3'
miRNA:   3'- guaCCUGGAGGGGCuGGGgUCCU--UGu -5'
9235 3' -59 NC_002512.2 + 142792 0.67 0.815465
Target:  5'- ----cACCUCCCCagcacgucgccccgcGACCCgAGGAACGc -3'
miRNA:   3'- guaccUGGAGGGG---------------CUGGGgUCCUUGU- -5'
9235 3' -59 NC_002512.2 + 184275 0.67 0.80374
Target:  5'- --cGGGCgUCUCCGGCauccagaUCGGGAACAg -3'
miRNA:   3'- guaCCUGgAGGGGCUGg------GGUCCUUGU- -5'
9235 3' -59 NC_002512.2 + 152841 0.67 0.80374
Target:  5'- --cGGGCCUCgCgGuCCCCAggcGGAACGu -3'
miRNA:   3'- guaCCUGGAGgGgCuGGGGU---CCUUGU- -5'
9235 3' -59 NC_002512.2 + 145477 0.67 0.80374
Target:  5'- --aGGACCUguucgaCCCCGuCCCgCAGaGGACGc -3'
miRNA:   3'- guaCCUGGA------GGGGCuGGG-GUC-CUUGU- -5'
9235 3' -59 NC_002512.2 + 125042 0.67 0.80374
Target:  5'- --aGGucCCUCCCCGccGCUCCAgccGGGACGg -3'
miRNA:   3'- guaCCu-GGAGGGGC--UGGGGU---CCUUGU- -5'
9235 3' -59 NC_002512.2 + 125401 0.67 0.80374
Target:  5'- -cUGaACCUCCCCGGgCCCGaGGGCGa -3'
miRNA:   3'- guACcUGGAGGGGCUgGGGUcCUUGU- -5'
9235 3' -59 NC_002512.2 + 96242 0.67 0.80374
Target:  5'- --gGcGACCgCCCCGGacuCCgCCAGGGACGa -3'
miRNA:   3'- guaC-CUGGaGGGGCU---GG-GGUCCUUGU- -5'
9235 3' -59 NC_002512.2 + 55463 0.67 0.80374
Target:  5'- cCGUGGuaGCCccgacggaggCCCCGGCgCCgCGGGAACGc -3'
miRNA:   3'- -GUACC--UGGa---------GGGGCUG-GG-GUCCUUGU- -5'
9235 3' -59 NC_002512.2 + 68113 0.67 0.8204
Target:  5'- -uUGGACCgaaacCUUCGACCCgcguaccguagCAGGAGCGg -3'
miRNA:   3'- guACCUGGa----GGGGCUGGG-----------GUCCUUGU- -5'
9235 3' -59 NC_002512.2 + 97884 0.67 0.8204
Target:  5'- --aGGuCC-CCCCGGCgCCCGGG-GCGg -3'
miRNA:   3'- guaCCuGGaGGGGCUG-GGGUCCuUGU- -5'
9235 3' -59 NC_002512.2 + 126638 0.67 0.827698
Target:  5'- --aGGACCagcucaggcggUCCCUGuCCCCggacaagAGGAGCAu -3'
miRNA:   3'- guaCCUGG-----------AGGGGCuGGGG-------UCCUUGU- -5'
9235 3' -59 NC_002512.2 + 113415 0.67 0.833284
Target:  5'- gCGUGGGCCgccgggaucaccgCCCCGuCCCCGagcuGGGugGc -3'
miRNA:   3'- -GUACCUGGa------------GGGGCuGGGGU----CCUugU- -5'
9235 3' -59 NC_002512.2 + 133338 0.67 0.836439
Target:  5'- aAUGGcguCCgggaUCCCCGGCCCCGGcucACAc -3'
miRNA:   3'- gUACCu--GG----AGGGGCUGGGGUCcu-UGU- -5'
9235 3' -59 NC_002512.2 + 13573 0.67 0.839567
Target:  5'- gUcgGGGCCgcagaugcaggugaCCCaCGuCCCCGGGAACu -3'
miRNA:   3'- -GuaCCUGGa-------------GGG-GCuGGGGUCCUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.