miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9238 3' -56.9 NC_002512.2 + 210842 0.66 0.941806
Target:  5'- cGGCCGU-CUGgGGgcugCUccGCGAGAUc -3'
miRNA:   3'- -CCGGCAcGACgCCaa--GGaaCGCUCUG- -5'
9238 3' -56.9 NC_002512.2 + 120782 0.66 0.93723
Target:  5'- cGGCCGU-CgGCGGgggcg-GCGGGACg -3'
miRNA:   3'- -CCGGCAcGaCGCCaaggaaCGCUCUG- -5'
9238 3' -56.9 NC_002512.2 + 2292 0.66 0.93723
Target:  5'- cGGCC--GCUGCGGgug---GCGGGGCu -3'
miRNA:   3'- -CCGGcaCGACGCCaaggaaCGCUCUG- -5'
9238 3' -56.9 NC_002512.2 + 216213 0.66 0.932431
Target:  5'- cGGCCGUcgccucguccgGgaGCuGGagCCgcgGCGAGACg -3'
miRNA:   3'- -CCGGCA-----------CgaCG-CCaaGGaa-CGCUCUG- -5'
9238 3' -56.9 NC_002512.2 + 140054 0.66 0.931939
Target:  5'- gGGCCGUGCagcGCGGUcucgacgUCCUcucgGCGcucaucGGCg -3'
miRNA:   3'- -CCGGCACGa--CGCCA-------AGGAa---CGCu-----CUG- -5'
9238 3' -56.9 NC_002512.2 + 82387 0.66 0.927408
Target:  5'- cGGCCG-GCgGUGGcUCCgcgcGCGGGGg -3'
miRNA:   3'- -CCGGCaCGaCGCCaAGGaa--CGCUCUg -5'
9238 3' -56.9 NC_002512.2 + 121157 0.66 0.927408
Target:  5'- cGCCG-GCcGCGGc-CCaggGCGAGGCg -3'
miRNA:   3'- cCGGCaCGaCGCCaaGGaa-CGCUCUG- -5'
9238 3' -56.9 NC_002512.2 + 191416 0.66 0.92216
Target:  5'- cGCCGUG--GCGGc-CCggGCGGGACa -3'
miRNA:   3'- cCGGCACgaCGCCaaGGaaCGCUCUG- -5'
9238 3' -56.9 NC_002512.2 + 7246 0.66 0.918903
Target:  5'- cGGCCGUcGCgGCGGagcggcgUCCgucgggaucgggcGCGAGGCc -3'
miRNA:   3'- -CCGGCA-CGaCGCCa------AGGaa-----------CGCUCUG- -5'
9238 3' -56.9 NC_002512.2 + 129540 0.66 0.917244
Target:  5'- cGCCGUGCUGCGuGgccggcgcccgccagUCCcgagGCGccgGGACg -3'
miRNA:   3'- cCGGCACGACGC-Ca--------------AGGaa--CGC---UCUG- -5'
9238 3' -56.9 NC_002512.2 + 39044 0.66 0.916687
Target:  5'- aGCUGuUGCUGCGGUagCggaCGAGGCc -3'
miRNA:   3'- cCGGC-ACGACGCCAagGaacGCUCUG- -5'
9238 3' -56.9 NC_002512.2 + 51198 0.66 0.916687
Target:  5'- cGGCCGcGCUGCGGg-CCU--CG-GACg -3'
miRNA:   3'- -CCGGCaCGACGCCaaGGAacGCuCUG- -5'
9238 3' -56.9 NC_002512.2 + 116888 0.66 0.916687
Target:  5'- cGGCUG-GCgGCGGggCCgggGCG-GGCu -3'
miRNA:   3'- -CCGGCaCGaCGCCaaGGaa-CGCuCUG- -5'
9238 3' -56.9 NC_002512.2 + 170373 0.67 0.91099
Target:  5'- gGGCCGUGC-GCGGcgCC--GCGcuGCa -3'
miRNA:   3'- -CCGGCACGaCGCCaaGGaaCGCucUG- -5'
9238 3' -56.9 NC_002512.2 + 27148 0.67 0.905071
Target:  5'- -cCCGUGCUGUacgccUUCCUcggGCGGGACu -3'
miRNA:   3'- ccGGCACGACGcc---AAGGAa--CGCUCUG- -5'
9238 3' -56.9 NC_002512.2 + 141289 0.67 0.898933
Target:  5'- cGGCCGcGCgcacgGCGGcaCCggcgGCGAcGACg -3'
miRNA:   3'- -CCGGCaCGa----CGCCaaGGaa--CGCU-CUG- -5'
9238 3' -56.9 NC_002512.2 + 115548 0.67 0.892576
Target:  5'- uGGaCGUGCUGCGGaUCg--GCGAG-Cg -3'
miRNA:   3'- -CCgGCACGACGCCaAGgaaCGCUCuG- -5'
9238 3' -56.9 NC_002512.2 + 120917 0.68 0.879222
Target:  5'- cGGCCcUGCUGaCGGacCCggGCGAcccGACg -3'
miRNA:   3'- -CCGGcACGAC-GCCaaGGaaCGCU---CUG- -5'
9238 3' -56.9 NC_002512.2 + 2801 0.68 0.879222
Target:  5'- cGGCCGgcgGCcgGCGGgaCCcgGCGcGGGCg -3'
miRNA:   3'- -CCGGCa--CGa-CGCCaaGGaaCGC-UCUG- -5'
9238 3' -56.9 NC_002512.2 + 124359 0.68 0.872233
Target:  5'- cGGCCGggcaguucgGCUGCcacGGcgUCCUgcGCGAGAg -3'
miRNA:   3'- -CCGGCa--------CGACG---CCa-AGGAa-CGCUCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.