miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9238 5' -54.3 NC_002512.2 + 27944 0.66 0.990177
Target:  5'- aCGGUCUCcCACGuacccgggcccgucGC-CGAUgGGCGGc -3'
miRNA:   3'- -GCCAGAGuGUGCu-------------UGaGCUGgUCGCC- -5'
9238 5' -54.3 NC_002512.2 + 203352 0.66 0.989679
Target:  5'- ---cCUCGgGCGAGCUgcCGACCAggccGCGGu -3'
miRNA:   3'- gccaGAGUgUGCUUGA--GCUGGU----CGCC- -5'
9238 5' -54.3 NC_002512.2 + 86417 0.66 0.989679
Target:  5'- -cGUCUCGC-CGAGagaUGACgAGCGGa -3'
miRNA:   3'- gcCAGAGUGuGCUUga-GCUGgUCGCC- -5'
9238 5' -54.3 NC_002512.2 + 154223 0.66 0.989679
Target:  5'- -cGUCUCuCGCG----CGGCCGGCGGa -3'
miRNA:   3'- gcCAGAGuGUGCuugaGCUGGUCGCC- -5'
9238 5' -54.3 NC_002512.2 + 28038 0.66 0.989679
Target:  5'- aGGcCcCAgGCGAGCUgcCGGCC-GCGGa -3'
miRNA:   3'- gCCaGaGUgUGCUUGA--GCUGGuCGCC- -5'
9238 5' -54.3 NC_002512.2 + 5378 0.66 0.989679
Target:  5'- cCGG-CUCugGCGcACcCGACaCAGcCGGa -3'
miRNA:   3'- -GCCaGAGugUGCuUGaGCUG-GUC-GCC- -5'
9238 5' -54.3 NC_002512.2 + 84875 0.66 0.989679
Target:  5'- cCGGgCguagCGgGCGAagcGCUCGACCuccuuccggaAGCGGg -3'
miRNA:   3'- -GCCaGa---GUgUGCU---UGAGCUGG----------UCGCC- -5'
9238 5' -54.3 NC_002512.2 + 137241 0.66 0.989679
Target:  5'- cCGGaUC-CGCGCGggUccCGgcGCCGGCGGc -3'
miRNA:   3'- -GCC-AGaGUGUGCuuGa-GC--UGGUCGCC- -5'
9238 5' -54.3 NC_002512.2 + 89409 0.66 0.989551
Target:  5'- aGGU-UCGCGCGGAaccaggcCUCGGgcgUCGGCGGg -3'
miRNA:   3'- gCCAgAGUGUGCUU-------GAGCU---GGUCGCC- -5'
9238 5' -54.3 NC_002512.2 + 144670 0.66 0.988347
Target:  5'- gCGGUC-CGgGCGAGCgaggacgaCGAcCCGGCGa -3'
miRNA:   3'- -GCCAGaGUgUGCUUGa-------GCU-GGUCGCc -5'
9238 5' -54.3 NC_002512.2 + 192984 0.66 0.988347
Target:  5'- uGGUcCUCcgGCGCGcuCUgGACC-GCGGg -3'
miRNA:   3'- gCCA-GAG--UGUGCuuGAgCUGGuCGCC- -5'
9238 5' -54.3 NC_002512.2 + 123237 0.66 0.988347
Target:  5'- gCGGgCUCgACuucuuCGAGCUCGAcgaCCGGCGc -3'
miRNA:   3'- -GCCaGAG-UGu----GCUUGAGCU---GGUCGCc -5'
9238 5' -54.3 NC_002512.2 + 36150 0.66 0.988347
Target:  5'- aGGccgcgUUCGCccACGAACUCGAgCAGCu- -3'
miRNA:   3'- gCCa----GAGUG--UGCUUGAGCUgGUCGcc -5'
9238 5' -54.3 NC_002512.2 + 105059 0.66 0.988347
Target:  5'- cCGGUgUCcgGCACGcAGC-CGaagaaGCCGGCGGu -3'
miRNA:   3'- -GCCAgAG--UGUGC-UUGaGC-----UGGUCGCC- -5'
9238 5' -54.3 NC_002512.2 + 115445 0.66 0.988347
Target:  5'- gCGGacuucgccgaUCACGCGAAC-CGGCUGGCGc -3'
miRNA:   3'- -GCCag--------AGUGUGCUUGaGCUGGUCGCc -5'
9238 5' -54.3 NC_002512.2 + 204764 0.66 0.986885
Target:  5'- cCGGcCUgggGCGCGGGgaCGACCGGgGGa -3'
miRNA:   3'- -GCCaGAg--UGUGCUUgaGCUGGUCgCC- -5'
9238 5' -54.3 NC_002512.2 + 95436 0.66 0.986885
Target:  5'- aGGUCa-GCAgGAAUUCGAa-AGCGGg -3'
miRNA:   3'- gCCAGagUGUgCUUGAGCUggUCGCC- -5'
9238 5' -54.3 NC_002512.2 + 89617 0.66 0.986885
Target:  5'- gCGGggcgCUCGgGCGccgaaGACUCGGCCAcGCa- -3'
miRNA:   3'- -GCCa---GAGUgUGC-----UUGAGCUGGU-CGcc -5'
9238 5' -54.3 NC_002512.2 + 83030 0.66 0.986885
Target:  5'- uGGcCcCGCGCGAGCUCGagcacccuggGCCAGgCGa -3'
miRNA:   3'- gCCaGaGUGUGCUUGAGC----------UGGUC-GCc -5'
9238 5' -54.3 NC_002512.2 + 75222 0.66 0.986885
Target:  5'- aCGGUCgcccgacgUCGgACGGucGCUCGGgaCGGCGGu -3'
miRNA:   3'- -GCCAG--------AGUgUGCU--UGAGCUg-GUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.