miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9240 3' -57.1 NC_002512.2 + 114434 0.66 0.950119
Target:  5'- --aCGCGGUCCGcGGAACGAGc-GGUu -3'
miRNA:   3'- gcaGUGUCGGGCuCCUUGCUCcaCCG- -5'
9240 3' -57.1 NC_002512.2 + 2785 0.66 0.950119
Target:  5'- cCGUCugAGCCCGAcccggccggcGGccGGCGGGacccGGCg -3'
miRNA:   3'- -GCAGugUCGGGCU----------CC--UUGCUCca--CCG- -5'
9240 3' -57.1 NC_002512.2 + 55539 0.66 0.950119
Target:  5'- --cCGCAuCCCGGcGGACGAGGgcgcGGCg -3'
miRNA:   3'- gcaGUGUcGGGCUcCUUGCUCCa---CCG- -5'
9240 3' -57.1 NC_002512.2 + 25196 0.66 0.950119
Target:  5'- aCGUCGC-GUCCGccgcgacggagcGGGAGCGAGccgccGGCg -3'
miRNA:   3'- -GCAGUGuCGGGC------------UCCUUGCUCca---CCG- -5'
9240 3' -57.1 NC_002512.2 + 99072 0.66 0.950119
Target:  5'- gGUUGgGGUggCUGAGGAugaaggcgGCGaAGGUGGCg -3'
miRNA:   3'- gCAGUgUCG--GGCUCCU--------UGC-UCCACCG- -5'
9240 3' -57.1 NC_002512.2 + 95874 0.66 0.950119
Target:  5'- gGcCGC-GCgCCGAGGAucuCGAGGUcgcccGGCc -3'
miRNA:   3'- gCaGUGuCG-GGCUCCUu--GCUCCA-----CCG- -5'
9240 3' -57.1 NC_002512.2 + 28569 0.66 0.94972
Target:  5'- aCGUCGCGGCagacggagcugauCCGAGcGGugcGCGucaucucGGUGGCc -3'
miRNA:   3'- -GCAGUGUCG-------------GGCUC-CU---UGCu------CCACCG- -5'
9240 3' -57.1 NC_002512.2 + 205620 0.66 0.948914
Target:  5'- cCGUCGCcGCCguccuuccugcccgCGGGGGACGccGUcGGCg -3'
miRNA:   3'- -GCAGUGuCGG--------------GCUCCUUGCucCA-CCG- -5'
9240 3' -57.1 NC_002512.2 + 157137 0.66 0.946029
Target:  5'- gGUCggcgGCgGGCCCGGGGcgGGCGGcGGgccgGGCg -3'
miRNA:   3'- gCAG----UG-UCGGGCUCC--UUGCU-CCa---CCG- -5'
9240 3' -57.1 NC_002512.2 + 142804 0.66 0.946029
Target:  5'- aCGUCGCcccgcGaCCCGAGGAACGccGUaaGGUu -3'
miRNA:   3'- -GCAGUGu----C-GGGCUCCUUGCucCA--CCG- -5'
9240 3' -57.1 NC_002512.2 + 153385 0.66 0.946029
Target:  5'- ---gGCGGUCCGGagcgacguGGAGCGcggcggcggucgAGGUGGCg -3'
miRNA:   3'- gcagUGUCGGGCU--------CCUUGC------------UCCACCG- -5'
9240 3' -57.1 NC_002512.2 + 65582 0.66 0.946029
Target:  5'- gGUCACGGuCCCGAaGGGAUu-GGUGa- -3'
miRNA:   3'- gCAGUGUC-GGGCU-CCUUGcuCCACcg -5'
9240 3' -57.1 NC_002512.2 + 112022 0.66 0.941725
Target:  5'- cCGUCuuGCGGCCgaaCGucAGGAugGAGaUGGCc -3'
miRNA:   3'- -GCAG--UGUCGG---GC--UCCUugCUCcACCG- -5'
9240 3' -57.1 NC_002512.2 + 57990 0.66 0.941725
Target:  5'- -aUCACcgAGUCCcGGGGACGAGG-GGg -3'
miRNA:   3'- gcAGUG--UCGGGcUCCUUGCUCCaCCg -5'
9240 3' -57.1 NC_002512.2 + 116723 0.66 0.941725
Target:  5'- gGUCGCGucccGCCCGGccGcGGCGAGGccGGCg -3'
miRNA:   3'- gCAGUGU----CGGGCU--CcUUGCUCCa-CCG- -5'
9240 3' -57.1 NC_002512.2 + 108541 0.66 0.941725
Target:  5'- cCGUCcaACGGCCCcgccgccGGAGCGAGGUc-- -3'
miRNA:   3'- -GCAG--UGUCGGGcu-----CCUUGCUCCAccg -5'
9240 3' -57.1 NC_002512.2 + 193688 0.66 0.941725
Target:  5'- --cCGCAGucgguCCCGGGGGACGAuGGaGGUc -3'
miRNA:   3'- gcaGUGUC-----GGGCUCCUUGCU-CCaCCG- -5'
9240 3' -57.1 NC_002512.2 + 221254 0.66 0.941725
Target:  5'- gGcCGCGGCggaagUCGGGGGACGcGG-GGCg -3'
miRNA:   3'- gCaGUGUCG-----GGCUCCUUGCuCCaCCG- -5'
9240 3' -57.1 NC_002512.2 + 204710 0.66 0.941283
Target:  5'- aCGUCggcgacgGCgGGCCCGGGG--CGGGG-GGCc -3'
miRNA:   3'- -GCAG-------UG-UCGGGCUCCuuGCUCCaCCG- -5'
9240 3' -57.1 NC_002512.2 + 158684 0.66 0.937204
Target:  5'- -aUCAUGGCCgGccGGGACGGGGaGGUg -3'
miRNA:   3'- gcAGUGUCGGgCu-CCUUGCUCCaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.