miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9240 5' -53.3 NC_002512.2 + 54383 0.66 0.992239
Target:  5'- uGGACCgACAUCgccaaguacgacgugCGgaacgUCCUggacGGCCUGCu -3'
miRNA:   3'- -CCUGG-UGUAGa--------------GCa----AGGA----CCGGAUGu -5'
9240 5' -53.3 NC_002512.2 + 126563 0.66 0.992134
Target:  5'- --cCCACG-CUCGgucgUCCUGGCgaACGc -3'
miRNA:   3'- ccuGGUGUaGAGCa---AGGACCGgaUGU- -5'
9240 5' -53.3 NC_002512.2 + 110928 0.66 0.992134
Target:  5'- aGGGCCGCGcUCUCGguggagaacaCCggGGCCaGCGc -3'
miRNA:   3'- -CCUGGUGU-AGAGCaa--------GGa-CCGGaUGU- -5'
9240 5' -53.3 NC_002512.2 + 93090 0.66 0.991029
Target:  5'- -aGCCGCGcgUCGUUCCUGGgcuUCUGCc -3'
miRNA:   3'- ccUGGUGUagAGCAAGGACC---GGAUGu -5'
9240 5' -53.3 NC_002512.2 + 161997 0.66 0.991029
Target:  5'- uGGACCugGUgCgggaugCGgaccgCCUGGCCgacgGCGa -3'
miRNA:   3'- -CCUGGugUA-Ga-----GCaa---GGACCGGa---UGU- -5'
9240 5' -53.3 NC_002512.2 + 165947 0.66 0.989804
Target:  5'- -uGCCAgGUCUuuUGUUCCUGGagUACAc -3'
miRNA:   3'- ccUGGUgUAGA--GCAAGGACCggAUGU- -5'
9240 5' -53.3 NC_002512.2 + 60299 0.66 0.989804
Target:  5'- aGGACC-UGUCgUCGUaCCUGGCggACGc -3'
miRNA:   3'- -CCUGGuGUAG-AGCAaGGACCGgaUGU- -5'
9240 5' -53.3 NC_002512.2 + 83801 0.66 0.989804
Target:  5'- aGGACCGCGUCgggCGcgCCggcGGCg-GCGg -3'
miRNA:   3'- -CCUGGUGUAGa--GCaaGGa--CCGgaUGU- -5'
9240 5' -53.3 NC_002512.2 + 100410 0.66 0.989675
Target:  5'- cGACgGCGUcCUCGUcgugucgUCCgagGGCCUcGCAg -3'
miRNA:   3'- cCUGgUGUA-GAGCA-------AGGa--CCGGA-UGU- -5'
9240 5' -53.3 NC_002512.2 + 152188 0.66 0.988594
Target:  5'- aGGACCGgGgucCUCGgagaguggaccccggUCCUGGCCgguucuagACAu -3'
miRNA:   3'- -CCUGGUgUa--GAGCa--------------AGGACCGGa-------UGU- -5'
9240 5' -53.3 NC_002512.2 + 26766 0.66 0.986966
Target:  5'- uGGcCCACGaCUCGgccgacgcCCUGGCCUuCGa -3'
miRNA:   3'- -CCuGGUGUaGAGCaa------GGACCGGAuGU- -5'
9240 5' -53.3 NC_002512.2 + 33100 0.66 0.986966
Target:  5'- gGGACCAUAUCUCGcugUCC-GcGUCcGCGa -3'
miRNA:   3'- -CCUGGUGUAGAGCa--AGGaC-CGGaUGU- -5'
9240 5' -53.3 NC_002512.2 + 145123 0.66 0.986966
Target:  5'- cGGCCAUcuaCUaCGccuaCCUGGCCUACAg -3'
miRNA:   3'- cCUGGUGua-GA-GCaa--GGACCGGAUGU- -5'
9240 5' -53.3 NC_002512.2 + 138763 0.66 0.986966
Target:  5'- cGACCACAUCUCGaacugcUCCaGcGCC-ACGg -3'
miRNA:   3'- cCUGGUGUAGAGCa-----AGGaC-CGGaUGU- -5'
9240 5' -53.3 NC_002512.2 + 105971 0.66 0.985337
Target:  5'- uGACCAgGUCU---UCCUGGCCg--- -3'
miRNA:   3'- cCUGGUgUAGAgcaAGGACCGGaugu -5'
9240 5' -53.3 NC_002512.2 + 132790 0.66 0.985337
Target:  5'- -aGCagaGCAgCUCGUUUCUGGCgUGCGc -3'
miRNA:   3'- ccUGg--UGUaGAGCAAGGACCGgAUGU- -5'
9240 5' -53.3 NC_002512.2 + 30809 0.66 0.985337
Target:  5'- cGGCCAC--CUCGggCCUGGaCUACc -3'
miRNA:   3'- cCUGGUGuaGAGCaaGGACCgGAUGu -5'
9240 5' -53.3 NC_002512.2 + 61134 0.66 0.985337
Target:  5'- cGACCAgGUCUUccgcaGcgCCUgcacGGCCUGCAa -3'
miRNA:   3'- cCUGGUgUAGAG-----CaaGGA----CCGGAUGU- -5'
9240 5' -53.3 NC_002512.2 + 193131 0.66 0.985337
Target:  5'- cGGCCcgACGUCacggUCGUccucgUCCUGGCCgGCGu -3'
miRNA:   3'- cCUGG--UGUAG----AGCA-----AGGACCGGaUGU- -5'
9240 5' -53.3 NC_002512.2 + 192124 0.66 0.985337
Target:  5'- aGGACCcuccGCGUCUcCGUUCUgcGGCCg--- -3'
miRNA:   3'- -CCUGG----UGUAGA-GCAAGGa-CCGGaugu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.