miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9243 3' -60.4 NC_002512.2 + 226497 0.68 0.754679
Target:  5'- gGUCCuCUGGGGACCUgUGGGCCccGcGGa -3'
miRNA:   3'- gCAGG-GGCCUCUGGG-ACCUGGa-CaCC- -5'
9243 3' -60.4 NC_002512.2 + 159940 0.68 0.745707
Target:  5'- aCGUCCCCGGuGGCC--GGACCg---- -3'
miRNA:   3'- -GCAGGGGCCuCUGGgaCCUGGacacc -5'
9243 3' -60.4 NC_002512.2 + 100807 0.68 0.727511
Target:  5'- cCGUCCUCGGGGucgaCCUGGACgaGg-- -3'
miRNA:   3'- -GCAGGGGCCUCug--GGACCUGgaCacc -5'
9243 3' -60.4 NC_002512.2 + 45182 0.68 0.727511
Target:  5'- uCGUCCUCGGAGGuCUCgaccgGGACCgGcGGc -3'
miRNA:   3'- -GCAGGGGCCUCU-GGGa----CCUGGaCaCC- -5'
9243 3' -60.4 NC_002512.2 + 37021 0.68 0.727511
Target:  5'- gCGUCCCCGGGGACCaCUGucACUcG-GGu -3'
miRNA:   3'- -GCAGGGGCCUCUGG-GACc-UGGaCaCC- -5'
9243 3' -60.4 NC_002512.2 + 170042 0.69 0.719227
Target:  5'- cCGUUCaCGGAGACCC-GGugucgucaugaccacCCUGUGGg -3'
miRNA:   3'- -GCAGGgGCCUCUGGGaCCu--------------GGACACC- -5'
9243 3' -60.4 NC_002512.2 + 78085 0.69 0.719227
Target:  5'- cCGUUCaCGGAGACCC-GGugucgucaugaccacCCUGUGGg -3'
miRNA:   3'- -GCAGGgGCCUCUGGGaCCu--------------GGACACC- -5'
9243 3' -60.4 NC_002512.2 + 78007 0.69 0.719227
Target:  5'- cCGUUCaCGGAGACCC-GGugucgucaugaccacCCUGUGGg -3'
miRNA:   3'- -GCAGGgGCCUCUGGGaCCu--------------GGACACC- -5'
9243 3' -60.4 NC_002512.2 + 77929 0.69 0.719227
Target:  5'- cCGUUCaCGGAGACCC-GGugucgucaugaccacCCUGUGGg -3'
miRNA:   3'- -GCAGGgGCCUCUGGGaCCu--------------GGACACC- -5'
9243 3' -60.4 NC_002512.2 + 100472 0.69 0.699702
Target:  5'- gCGUUCUCGGucguGGCCC-GGACCU-UGGg -3'
miRNA:   3'- -GCAGGGGCCu---CUGGGaCCUGGAcACC- -5'
9243 3' -60.4 NC_002512.2 + 152196 0.69 0.690324
Target:  5'- gGUCCUCGGAgagugGACCCcGGuCCUGgccGGu -3'
miRNA:   3'- gCAGGGGCCU-----CUGGGaCCuGGACa--CC- -5'
9243 3' -60.4 NC_002512.2 + 135655 0.7 0.661967
Target:  5'- uCGUaCCCCGuGGuGAUCCUGGucguCCUcGUGGg -3'
miRNA:   3'- -GCA-GGGGC-CU-CUGGGACCu---GGA-CACC- -5'
9243 3' -60.4 NC_002512.2 + 149138 0.7 0.642947
Target:  5'- --cCCCCGG-GACCCgGGACCgccgcgGGg -3'
miRNA:   3'- gcaGGGGCCuCUGGGaCCUGGaca---CC- -5'
9243 3' -60.4 NC_002512.2 + 146801 0.7 0.623897
Target:  5'- --aCCCggaGGAGGCCCgGGACCUGg-- -3'
miRNA:   3'- gcaGGGg--CCUCUGGGaCCUGGACacc -5'
9243 3' -60.4 NC_002512.2 + 142631 0.7 0.623897
Target:  5'- uCGcUCCCCGGAGACCCcucgcaGGuCagguugaUGUGGa -3'
miRNA:   3'- -GC-AGGGGCCUCUGGGa-----CCuGg------ACACC- -5'
9243 3' -60.4 NC_002512.2 + 53380 0.7 0.623897
Target:  5'- aCG-CUCCGGAGACCgaGGACgaG-GGa -3'
miRNA:   3'- -GCaGGGGCCUCUGGgaCCUGgaCaCC- -5'
9243 3' -60.4 NC_002512.2 + 185415 0.71 0.599171
Target:  5'- cCGgCCCCGGGGcGCCCUGGAggucuucgaggccguCCUGUc- -3'
miRNA:   3'- -GCaGGGGCCUC-UGGGACCU---------------GGACAcc -5'
9243 3' -60.4 NC_002512.2 + 78163 0.71 0.589693
Target:  5'- cCGUUCUCGGAGACCCgaagugucgucauGAucacCCUGUGGg -3'
miRNA:   3'- -GCAGGGGCCUCUGGGac-----------CU----GGACACC- -5'
9243 3' -60.4 NC_002512.2 + 78243 0.71 0.589693
Target:  5'- cCGUUCUCGGAGACCCgaagugucgucauGAucacCCUGUGGg -3'
miRNA:   3'- -GCAGGGGCCUCUGGGac-----------CU----GGACACC- -5'
9243 3' -60.4 NC_002512.2 + 74759 0.71 0.576471
Target:  5'- -uUCCCCGGAcGACCCaGGAgCUcuuccaggGUGGg -3'
miRNA:   3'- gcAGGGGCCU-CUGGGaCCUgGA--------CACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.