miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9243 5' -58.8 NC_002512.2 + 148501 0.67 0.830599
Target:  5'- -gCCGGGgacgGGGaCGAGGAGgcGGCCGc -3'
miRNA:   3'- uaGGUCC----UCCgGCUUCUCuaCCGGCa -5'
9243 5' -58.8 NC_002512.2 + 128175 0.67 0.830599
Target:  5'- -cCCGGGgacgAGGUCGccGAGcgGGCCGc -3'
miRNA:   3'- uaGGUCC----UCCGGCuuCUCuaCCGGCa -5'
9243 5' -58.8 NC_002512.2 + 138583 0.67 0.830599
Target:  5'- -aCCAcgcugcGGAucgcGGCCGggGAGAcgcUGGCCa- -3'
miRNA:   3'- uaGGU------CCU----CCGGCuuCUCU---ACCGGca -5'
9243 5' -58.8 NC_002512.2 + 99917 0.67 0.82242
Target:  5'- -gCCGGGGGcccGCCGAAGGGcgGcGUCGg -3'
miRNA:   3'- uaGGUCCUC---CGGCUUCUCuaC-CGGCa -5'
9243 5' -58.8 NC_002512.2 + 44474 0.67 0.82242
Target:  5'- cUCCAGGgcgccccgGGGCCGGgcGGAGAagacGGCCu- -3'
miRNA:   3'- uAGGUCC--------UCCGGCU--UCUCUa---CCGGca -5'
9243 5' -58.8 NC_002512.2 + 227462 0.67 0.82242
Target:  5'- -gCCGGGggagAGGCCGggGGc--GGCCGg -3'
miRNA:   3'- uaGGUCC----UCCGGCuuCUcuaCCGGCa -5'
9243 5' -58.8 NC_002512.2 + 80704 0.67 0.82242
Target:  5'- cGUCCGGGGGG-CGAGGGcgcGcgGGCCc- -3'
miRNA:   3'- -UAGGUCCUCCgGCUUCU---CuaCCGGca -5'
9243 5' -58.8 NC_002512.2 + 121345 0.67 0.82242
Target:  5'- cUCCGGcggcGGGGCCGuuggacggcGGAGAgGGCCGg -3'
miRNA:   3'- uAGGUC----CUCCGGCu--------UCUCUaCCGGCa -5'
9243 5' -58.8 NC_002512.2 + 125205 0.67 0.814079
Target:  5'- cGUCCAGGAcGCgGAGGAGGaacGCCGc -3'
miRNA:   3'- -UAGGUCCUcCGgCUUCUCUac-CGGCa -5'
9243 5' -58.8 NC_002512.2 + 25617 0.67 0.814079
Target:  5'- cGUCCAGGAGGCgGuagguguGGAGGUuaucGGCgGc -3'
miRNA:   3'- -UAGGUCCUCCGgCu------UCUCUA----CCGgCa -5'
9243 5' -58.8 NC_002512.2 + 95845 0.67 0.805584
Target:  5'- --gCAGGAGGCCGggGGcGGcguccucccagGGCCGc -3'
miRNA:   3'- uagGUCCUCCGGCuuCU-CUa----------CCGGCa -5'
9243 5' -58.8 NC_002512.2 + 96504 0.67 0.805584
Target:  5'- gGUCCGGGcgaccGCCGGAGGGAgccGcGCCGg -3'
miRNA:   3'- -UAGGUCCuc---CGGCUUCUCUa--C-CGGCa -5'
9243 5' -58.8 NC_002512.2 + 45460 0.67 0.805584
Target:  5'- -gCCGGcGGcGGCCGAggcgacGGAGAaGGCCGa -3'
miRNA:   3'- uaGGUC-CU-CCGGCU------UCUCUaCCGGCa -5'
9243 5' -58.8 NC_002512.2 + 116987 0.67 0.796941
Target:  5'- cGUCCGGGcGGGCCGAcggccgcacgcAGGGcgGGCg-- -3'
miRNA:   3'- -UAGGUCC-UCCGGCU-----------UCUCuaCCGgca -5'
9243 5' -58.8 NC_002512.2 + 117038 0.67 0.796941
Target:  5'- -gCCGGGAGuucGCCG-AGAuGAcGGCCGUg -3'
miRNA:   3'- uaGGUCCUC---CGGCuUCU-CUaCCGGCA- -5'
9243 5' -58.8 NC_002512.2 + 220311 0.67 0.796941
Target:  5'- -gCCGGGGGGCCGGg-----GGCCGg -3'
miRNA:   3'- uaGGUCCUCCGGCUucucuaCCGGCa -5'
9243 5' -58.8 NC_002512.2 + 150039 0.67 0.788159
Target:  5'- -aCgAGGGGGCCGggGAcGAcggGGCgGg -3'
miRNA:   3'- uaGgUCCUCCGGCuuCU-CUa--CCGgCa -5'
9243 5' -58.8 NC_002512.2 + 6438 0.68 0.779245
Target:  5'- cGUCUGGcGGGcGCCGAgacAGGGGUcGGCCGg -3'
miRNA:   3'- -UAGGUC-CUC-CGGCU---UCUCUA-CCGGCa -5'
9243 5' -58.8 NC_002512.2 + 94826 0.68 0.779245
Target:  5'- cGUCCcGGAGccGCCGGaggaAGAGcGUGGCCGc -3'
miRNA:   3'- -UAGGuCCUC--CGGCU----UCUC-UACCGGCa -5'
9243 5' -58.8 NC_002512.2 + 126284 0.68 0.779245
Target:  5'- -aCCGGGAGGCCGucGAcaccgcccucGUGGCCu- -3'
miRNA:   3'- uaGGUCCUCCGGCuuCUc---------UACCGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.